{"id":"https://openalex.org/W2136335915","doi":"https://doi.org/10.1007/978-3-540-72845-0_27","title":"Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data","display_name":"Improving Tree Search in Phylogenetic Reconstruction from Genome Rearrangement Data","publication_year":2007,"publication_date":"2007-06-26","ids":{"openalex":"https://openalex.org/W2136335915","doi":"https://doi.org/10.1007/978-3-540-72845-0_27","mag":"2136335915"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-72845-0_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72845-0_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100357209","display_name":"Fei Ye","orcid":"https://orcid.org/0000-0001-9512-3625"},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fei Ye","raw_affiliation_strings":["Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC 29208, USA","Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC 29208, USA","institution_ids":["https://openalex.org/I155781252"]},{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101997489","display_name":"Yan Guo","orcid":"https://orcid.org/0000-0002-0886-6621"},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Guo","raw_affiliation_strings":["Department of Computer Science & Engineering, University of South Carolina, Columbia, SC 29208, USA","Dept. of Comput. Sci. & Eng., Univ. of South Carolina, Columbia, SC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, University of South Carolina, Columbia, SC 29208, USA","institution_ids":["https://openalex.org/I155781252"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Eng., Univ. of South Carolina, Columbia, SC","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112360409","display_name":"Andrew Lawson","orcid":null},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew Lawson","raw_affiliation_strings":["Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC 29208, USA","Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC 29208, USA","institution_ids":["https://openalex.org/I155781252"]},{"raw_affiliation_string":"Department of Epidemiology and Biostatistics, University of South Carolina, Columbia, SC","institution_ids":["https://openalex.org/I155781252"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001619694","display_name":"Jijun Tang","orcid":"https://orcid.org/0000-0002-6377-536X"},"institutions":[{"id":"https://openalex.org/I155781252","display_name":"University of South Carolina","ror":"https://ror.org/02b6qw903","country_code":"US","type":"education","lineage":["https://openalex.org/I155781252"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jijun Tang","raw_affiliation_strings":["Department of Computer Science & Engineering, University of South Carolina, Columbia, SC 29208, USA","Dept. of Comput. Sci. & Eng., Univ. of South Carolina, Columbia, SC"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, University of South Carolina, Columbia, SC 29208, USA","institution_ids":["https://openalex.org/I155781252"]},{"raw_affiliation_string":"Dept. of Comput. Sci. & Eng., Univ. of South Carolina, Columbia, SC","institution_ids":["https://openalex.org/I155781252"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5001619694"],"corresponding_institution_ids":["https://openalex.org/I155781252"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.11497157,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"352","last_page":"364"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9448000192642212,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/markov-chain-monte-carlo","display_name":"Markov chain Monte Carlo","score":0.6930742263793945},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6919620037078857},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.636066198348999},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5720437169075012},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5614662766456604},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.49490755796432495},{"id":"https://openalex.org/keywords/monte-carlo-tree-search","display_name":"Monte Carlo tree search","score":0.43301868438720703},{"id":"https://openalex.org/keywords/phylogenetics","display_name":"Phylogenetics","score":0.4225393235683441},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.4215392768383026},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.37958163022994995},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.343711256980896},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33516258001327515},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.300912082195282},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.2608744502067566},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2594788074493408},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.255512535572052},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1601329743862152},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08764269948005676},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.08701619505882263},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08628290891647339}],"concepts":[{"id":"https://openalex.org/C111350023","wikidata":"https://www.wikidata.org/wiki/Q1191869","display_name":"Markov chain Monte Carlo","level":3,"score":0.6930742263793945},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6919620037078857},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.636066198348999},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5720437169075012},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5614662766456604},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.49490755796432495},{"id":"https://openalex.org/C46149586","wikidata":"https://www.wikidata.org/wiki/Q11785332","display_name":"Monte Carlo tree search","level":3,"score":0.43301868438720703},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.4225393235683441},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.4215392768383026},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.37958163022994995},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.343711256980896},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33516258001327515},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.300912082195282},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.2608744502067566},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2594788074493408},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.255512535572052},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1601329743862152},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08764269948005676},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.08701619505882263},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08628290891647339},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-72845-0_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72845-0_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.90.5584","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.90.5584","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cse.sc.edu/~jtang/particle.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W26772505","https://openalex.org/W152315924","https://openalex.org/W1483307070","https://openalex.org/W1506292197","https://openalex.org/W1520116718","https://openalex.org/W1544729927","https://openalex.org/W1559705588","https://openalex.org/W1569808656","https://openalex.org/W1572531572","https://openalex.org/W1582154576","https://openalex.org/W1594983821","https://openalex.org/W1794479819","https://openalex.org/W1963972906","https://openalex.org/W1974676566","https://openalex.org/W2015077894","https://openalex.org/W2026452889","https://openalex.org/W2029943378","https://openalex.org/W2041246058","https://openalex.org/W2041797002","https://openalex.org/W2043207852","https://openalex.org/W2043887813","https://openalex.org/W2049796549","https://openalex.org/W2060973867","https://openalex.org/W2069010522","https://openalex.org/W2081192873","https://openalex.org/W2097706568","https://openalex.org/W2102813451","https://openalex.org/W2103849916","https://openalex.org/W2133090982","https://openalex.org/W2137119840","https://openalex.org/W2137307912","https://openalex.org/W2157312689","https://openalex.org/W2165422244","https://openalex.org/W2168634963","https://openalex.org/W2169418988","https://openalex.org/W2240125645","https://openalex.org/W2477408078","https://openalex.org/W2504900979","https://openalex.org/W2561675875","https://openalex.org/W4206702770","https://openalex.org/W4255466524","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W3161267193","https://openalex.org/W2009494982","https://openalex.org/W2387199019","https://openalex.org/W2057894309","https://openalex.org/W2991335786","https://openalex.org/W4294048575","https://openalex.org/W3035894404","https://openalex.org/W2363230357","https://openalex.org/W2211601939","https://openalex.org/W206494857"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
