{"id":"https://openalex.org/W2152664962","doi":"https://doi.org/10.1007/978-3-540-72630-2_17","title":"Interactive Visualization of Gene Regulatory Networks with Associated Gene Expression Time Series Data","display_name":"Interactive Visualization of Gene Regulatory Networks with Associated Gene Expression Time Series Data","publication_year":2007,"publication_date":"2007-12-26","ids":{"openalex":"https://openalex.org/W2152664962","doi":"https://doi.org/10.1007/978-3-540-72630-2_17","mag":"2152664962"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-72630-2_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72630-2_17","pdf_url":null,"source":{"id":"https://openalex.org/S4210191043","display_name":"Mathematics and visualization","issn_l":"1612-3786","issn":["1612-3786","2197-666X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematics and Visualization","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://research.rug.nl/en/publications/407c14ae-51e6-47ae-9283-73239eb39cbb","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039489539","display_name":"Michel A. Westenberg","orcid":"https://orcid.org/0000-0003-4355-7805"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Michel A. Westenberg","raw_affiliation_strings":["Institute for Mathematics and Computing Science, University of Groningen, P.O. Box 800, 9700, AV Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Mathematics and Computing Science, University of Groningen, P.O. Box 800, 9700, AV Groningen, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024324359","display_name":"Sacha A. F. T. van Hijum","orcid":"https://orcid.org/0000-0003-0741-2991"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Sacha A. F. T. van Hijum","raw_affiliation_strings":["Department of Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, P.O. Box 14, 7950, AA Haren, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, P.O. Box 14, 7950, AA Haren, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071448604","display_name":"Andrzej T. Lulko","orcid":null},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Andrzej T. Lulko","raw_affiliation_strings":["Department of Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, P.O. Box 14, 7950, AA Haren, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, P.O. Box 14, 7950, AA Haren, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017781414","display_name":"Oscar P. Kuipers","orcid":"https://orcid.org/0000-0001-5596-7735"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Oscar P. Kuipers","raw_affiliation_strings":["Department of Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, P.O. Box 14, 7950, AA Haren, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Genetics, Groningen Biomolecular Sciences and Biotechnology Institute, University of Groningen, P.O. Box 14, 7950, AA Haren, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073784823","display_name":"Jos B. T. M. Roerdink","orcid":"https://orcid.org/0000-0003-1092-9633"},"institutions":[{"id":"https://openalex.org/I169381384","display_name":"University of Groningen","ror":"https://ror.org/012p63287","country_code":"NL","type":"education","lineage":["https://openalex.org/I169381384"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Jos B. T. M. Roerdink","raw_affiliation_strings":["Institute for Mathematics and Computing Science, University of Groningen, P.O. Box 800, 9700, AV Groningen, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Mathematics and Computing Science, University of Groningen, P.O. Box 800, 9700, AV Groningen, The Netherlands","institution_ids":["https://openalex.org/I169381384"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I169381384"],"apc_list":null,"apc_paid":null,"fwci":2.8076,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.90778774,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"293","last_page":"311"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.993399977684021,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6851929426193237},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5824112296104431},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5474203824996948},{"id":"https://openalex.org/keywords/regulator","display_name":"Regulator","score":0.5464540719985962},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5454538464546204},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5233404040336609},{"id":"https://openalex.org/keywords/zoom","display_name":"Zoom","score":0.5005419254302979},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.48830151557922363},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.48061174154281616},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.46977490186691284},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44856828451156616},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.43562015891075134},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4153107702732086},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41224104166030884},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.26630884408950806}],"concepts":[{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6851929426193237},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5824112296104431},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5474203824996948},{"id":"https://openalex.org/C6929976","wikidata":"https://www.wikidata.org/wiki/Q3771881","display_name":"Regulator","level":3,"score":0.5464540719985962},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5454538464546204},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5233404040336609},{"id":"https://openalex.org/C124913957","wikidata":"https://www.wikidata.org/wiki/Q1232548","display_name":"Zoom","level":3,"score":0.5005419254302979},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.48830151557922363},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.48061174154281616},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.46977490186691284},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44856828451156616},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.43562015891075134},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4153107702732086},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41224104166030884},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.26630884408950806},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C15336307","wikidata":"https://www.wikidata.org/wiki/Q1766051","display_name":"Lens (geology)","level":2,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":8,"locations":[{"id":"doi:10.1007/978-3-540-72630-2_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72630-2_17","pdf_url":null,"source":{"id":"https://openalex.org/S4210191043","display_name":"Mathematics and visualization","issn_l":"1612-3786","issn":["1612-3786","2197-666X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319965","host_organization_name":"Springer Nature","host_organization_lineage":["https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mathematics and Visualization","raw_type":"book-chapter"},{"id":"pmh:oai:pure.rug.nl:openaire/407c14ae-51e6-47ae-9283-73239eb39cbb","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/407c14ae-51e6-47ae-9283-73239eb39cbb","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Westenberg, M A, Hijum, S A F T V, Lulko, A T, Kuipers, O P & Roerdink, J B T M 2008, Interactive visualization of gene regulatory networks with associated gene expression time series data. in L Linsen, H Hagen & B Hamann (eds), VISUALIZATION IN MEDICINE AND LIFE SCIENCES. MATHEMATICS AND VISUALIZATION, Springer, BERLIN, pp. 293-+, Workshop on Visualization in Medicine and Life Sciences, Germany, 01/07/2006.","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:655693","is_oa":false,"landing_page_url":"http://library.tue.nl/csp/dare/LinkToRepository.csp?recordnumber=655693","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN:978-3-540-72629-6","raw_type":"Part of book or chapter of book"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.332.1325","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.332.1325","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.win.tue.nl/~mwestenb/papers/Westenberg-VMLS06.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.81.9699","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.81.9699","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.rug.nl/~roe/publications/genevis.pdf","raw_type":"text"},{"id":"pmh:oai:library.tue.nl:655693","is_oa":false,"landing_page_url":"http://repository.tue.nl/655693","pdf_url":null,"source":{"id":"https://openalex.org/S4406923046","display_name":"TU/e Research Portal (Eindhoven University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN:978-3-540-72629-6","raw_type":"Part of book or chapter of book"},{"id":"pmh:oai:pure.tue.nl:openaire_cris_publications/36af64fc-6032-470c-9718-dccf5142b22d","is_oa":false,"landing_page_url":"https://research.tue.nl/en/publications/36af64fc-6032-470c-9718-dccf5142b22d","pdf_url":null,"source":{"id":"https://openalex.org/S4406922641","display_name":"TU/e Research Portal","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Westenberg, M A, Hijum, van, S A F T, Lulko, A T, Kuipers, O P & Roerdink, J B T M 2008, Interactive visualization of gene regulatory networks with associated gene expression time series data. in L Linsen, H Hagen & B Hamann (eds), Visualization in Medicine and Life Sciences. Mathematics and Visualization, Springer, Berlin, pp. 293-312. https://doi.org/10.1007/978-3-540-72630-2_17","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"pmh:tue:oai:pure.tue.nl:publications/36af64fc-6032-470c-9718-dccf5142b22d","is_oa":false,"landing_page_url":"https://research.tue.nl/nl/publications/36af64fc-6032-470c-9718-dccf5142b22d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401843","display_name":"Data Archiving and Networked Services (DANS)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1322597698","host_organization_name":"Royal Netherlands Academy of Arts and Sciences","host_organization_lineage":["https://openalex.org/I1322597698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Visualization in Medicine and Life Sciences, 293 - 312","raw_type":"info:eu-repo/semantics/bookpart"}],"best_oa_location":{"id":"pmh:oai:pure.rug.nl:openaire/407c14ae-51e6-47ae-9283-73239eb39cbb","is_oa":true,"landing_page_url":"https://research.rug.nl/en/publications/407c14ae-51e6-47ae-9283-73239eb39cbb","pdf_url":null,"source":{"id":"https://openalex.org/S4306400420","display_name":"University of Groningen research database (University of Groningen / Centre for Information Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I169381384","host_organization_name":"University of Groningen","host_organization_lineage":["https://openalex.org/I169381384"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Westenberg, M A, Hijum, S A F T V, Lulko, A T, Kuipers, O P & Roerdink, J B T M 2008, Interactive visualization of gene regulatory networks with associated gene expression time series data. in L Linsen, H Hagen & B Hamann (eds), VISUALIZATION IN MEDICINE AND LIFE SCIENCES. MATHEMATICS AND VISUALIZATION, Springer, BERLIN, pp. 293-+, Workshop on Visualization in Medicine and Life Sciences, Germany, 01/07/2006.","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1668625893","https://openalex.org/W1823329909","https://openalex.org/W1971425971","https://openalex.org/W2018527742","https://openalex.org/W2082093843","https://openalex.org/W2102664288","https://openalex.org/W2103017472","https://openalex.org/W2111781385","https://openalex.org/W2116419230","https://openalex.org/W2125327808","https://openalex.org/W2137918905","https://openalex.org/W2139483589","https://openalex.org/W2139562235","https://openalex.org/W2141883257","https://openalex.org/W2144407709","https://openalex.org/W2145889895","https://openalex.org/W2147468287","https://openalex.org/W2159675211","https://openalex.org/W2162242271","https://openalex.org/W2165741325","https://openalex.org/W2165876088","https://openalex.org/W2169934605","https://openalex.org/W4246741810"],"related_works":["https://openalex.org/W2222265074","https://openalex.org/W2010571965","https://openalex.org/W2002709996","https://openalex.org/W3128451840","https://openalex.org/W4387092964","https://openalex.org/W2103471012","https://openalex.org/W2966064480","https://openalex.org/W2380236774","https://openalex.org/W4291672717","https://openalex.org/W4317476908"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
