{"id":"https://openalex.org/W117643981","doi":"https://doi.org/10.1007/978-3-540-72608-1_24","title":"Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents","display_name":"Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents","publication_year":2007,"publication_date":"2007-06-10","ids":{"openalex":"https://openalex.org/W117643981","doi":"https://doi.org/10.1007/978-3-540-72608-1_24","mag":"117643981"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-72608-1_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72608-1_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089183537","display_name":"Lynn M. Schriml","orcid":"https://orcid.org/0000-0001-8910-9851"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lynn M. Schriml","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063496570","display_name":"Aaron Gussman","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Gussman","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032691934","display_name":"Kathy Phillippy","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kathy Phillippy","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010137910","display_name":"Samuel V. Angiuoli","orcid":"https://orcid.org/0000-0001-9525-4350"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sam Angiuoli","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111877537","display_name":"Kumar L Hari","orcid":null},"institutions":[{"id":"https://openalex.org/I2800035258","display_name":"Ionis Pharmaceuticals (United States)","ror":"https://ror.org/00t8bew53","country_code":"US","type":"company","lineage":["https://openalex.org/I2800035258"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kumar Hari","raw_affiliation_strings":["Ibis Biosciences, a Division of Isis Pharmaceuticals, Inc.,"],"affiliations":[{"raw_affiliation_string":"Ibis Biosciences, a Division of Isis Pharmaceuticals, Inc.,","institution_ids":["https://openalex.org/I2800035258"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012582374","display_name":"Alan T. Goates","orcid":null},"institutions":[{"id":"https://openalex.org/I2800035258","display_name":"Ionis Pharmaceuticals (United States)","ror":"https://ror.org/00t8bew53","country_code":"US","type":"company","lineage":["https://openalex.org/I2800035258"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan Goates","raw_affiliation_strings":["Ibis Biosciences, a Division of Isis Pharmaceuticals, Inc.,"],"affiliations":[{"raw_affiliation_string":"Ibis Biosciences, a Division of Isis Pharmaceuticals, Inc.,","institution_ids":["https://openalex.org/I2800035258"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101726441","display_name":"Ravi Jain","orcid":"https://orcid.org/0000-0003-3691-0447"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ravi Jain","raw_affiliation_strings":["cBIO, Inc.,"],"affiliations":[{"raw_affiliation_string":"cBIO, Inc.,","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050911066","display_name":"Tanja Davidsen","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Tanja Davidsen","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032385699","display_name":"Anu Ganapathy","orcid":null},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anu Ganapathy","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078964229","display_name":"Elodie Ghedin","orcid":"https://orcid.org/0000-0002-1515-725X"},"institutions":[{"id":"https://openalex.org/I170201317","display_name":"University of Pittsburgh","ror":"https://ror.org/01an3r305","country_code":"US","type":"education","lineage":["https://openalex.org/I170201317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Elodie Ghedin","raw_affiliation_strings":["University of Pittsburgh School of Medicine, Division of Infectious Diseases,"],"affiliations":[{"raw_affiliation_string":"University of Pittsburgh School of Medicine, Division of Infectious Diseases,","institution_ids":["https://openalex.org/I170201317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010384159","display_name":"Steven L. Salzberg","orcid":"https://orcid.org/0000-0002-8859-7432"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]},{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Steven Salzberg","raw_affiliation_strings":["Center for Bioinformatics and Computational Biology, University of Maryland,","The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"Center for Bioinformatics and Computational Biology, University of Maryland,","institution_ids":["https://openalex.org/I66946132"]},{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029429968","display_name":"Owen White","orcid":"https://orcid.org/0000-0003-2407-7320"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Owen White","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5057145757","display_name":"Neil Hall","orcid":"https://orcid.org/0000-0003-2808-0009"},"institutions":[{"id":"https://openalex.org/I1301553790","display_name":"J. Craig Venter Institute","ror":"https://ror.org/049r1ts75","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1301553790"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neil Hall","raw_affiliation_strings":["The Institute for Genomic Research, a Division of J. Craig Venter Institute,"],"affiliations":[{"raw_affiliation_string":"The Institute for Genomic Research, a Division of J. Craig Venter Institute,","institution_ids":["https://openalex.org/I1301553790"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5089183537"],"corresponding_institution_ids":["https://openalex.org/I1301553790"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.0971,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.7782265,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"228","last_page":"229"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9775000214576721,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12492","display_name":"Zoonotic diseases and public health","score":0.9739000201225281,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10038","display_name":"Tuberculosis Research and Epidemiology","score":0.9581999778747559,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8083782196044922},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5961022973060608},{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.5513290762901306},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5472951531410217},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.48570260405540466},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.46086299419403076},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.4504930078983307},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"Whole genome sequencing","score":0.4482354521751404},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.443293035030365},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.34980666637420654},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22755831480026245},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.15396273136138916}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8083782196044922},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5961022973060608},{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.5513290762901306},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5472951531410217},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.48570260405540466},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.46086299419403076},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.4504930078983307},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4482354521751404},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.443293035030365},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.34980666637420654},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22755831480026245},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.15396273136138916}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-72608-1_24","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72608-1_24","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.6800000071525574}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":2,"referenced_works":["https://openalex.org/W1489194140","https://openalex.org/W2103260426"],"related_works":["https://openalex.org/W1997128949","https://openalex.org/W2791852654","https://openalex.org/W4244694755","https://openalex.org/W2143649997","https://openalex.org/W3015172208","https://openalex.org/W4283169100","https://openalex.org/W2804963910","https://openalex.org/W2175240434","https://openalex.org/W1989359751","https://openalex.org/W4286815215"],"abstract_inverted_index":null,"counts_by_year":[{"year":2015,"cited_by_count":1}],"updated_date":"2026-01-15T23:16:33.117629","created_date":"2025-10-10T00:00:00"}
