{"id":"https://openalex.org/W1541227278","doi":"https://doi.org/10.1007/978-3-540-72031-7_55","title":"DNA Sites Buried in Nucleosome Become Accessible at Room Temperature: A Discrete-Event-Simulation Based Modeling Approach","display_name":"DNA Sites Buried in Nucleosome Become Accessible at Room Temperature: A Discrete-Event-Simulation Based Modeling Approach","publication_year":2007,"publication_date":"2007-08-05","ids":{"openalex":"https://openalex.org/W1541227278","doi":"https://doi.org/10.1007/978-3-540-72031-7_55","mag":"1541227278"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-72031-7_55","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72031-7_55","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003106584","display_name":"Amin R. Mazloom","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Amin R. Mazloom","raw_affiliation_strings":["CReWMaN Lab, Department of Computer Science and Engineering,","CReWMaN Lab, Department of Computer Science and Engineering, The University of Texas at Arlington, Arlington, TX#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CReWMaN Lab, Department of Computer Science and Engineering,","institution_ids":[]},{"raw_affiliation_string":"CReWMaN Lab, Department of Computer Science and Engineering, The University of Texas at Arlington, Arlington, TX#TAB#","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105420652","display_name":"Kalyan Basu","orcid":"https://orcid.org/0009-0003-8699-4498"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kalyan Basu","raw_affiliation_strings":["CReWMaN Lab, Department of Computer Science and Engineering,","CReWMaN Lab, Department of Computer Science and Engineering, The University of Texas at Arlington, Arlington, TX#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CReWMaN Lab, Department of Computer Science and Engineering,","institution_ids":[]},{"raw_affiliation_string":"CReWMaN Lab, Department of Computer Science and Engineering, The University of Texas at Arlington, Arlington, TX#TAB#","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077571791","display_name":"Subhrangsu S. Mandal","orcid":"https://orcid.org/0000-0001-8495-9881"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Subhrangsu S. Mandal","raw_affiliation_strings":["Department of Chemistry and Biochemistry,","Department of Chemistry and Biochemistry The University of Texas at Arlington Arlington TX"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chemistry and Biochemistry,","institution_ids":[]},{"raw_affiliation_string":"Department of Chemistry and Biochemistry The University of Texas at Arlington Arlington TX","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015124019","display_name":"Mehran Sorourian","orcid":null},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mehran Sorourian","raw_affiliation_strings":["Department of Biology, The University Of Texas at Arlington, Arlington TX 76019-23015, USA","Department of Biology, The University of Texas at Arlington, Arlington, TX#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, The University Of Texas at Arlington, Arlington TX 76019-23015, USA","institution_ids":["https://openalex.org/I189196454"]},{"raw_affiliation_string":"Department of Biology, The University of Texas at Arlington, Arlington, TX#TAB#","institution_ids":["https://openalex.org/I189196454"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050881965","display_name":"Sajal K. Das","orcid":"https://orcid.org/0000-0002-9471-0868"},"institutions":[{"id":"https://openalex.org/I189196454","display_name":"The University of Texas at Arlington","ror":"https://ror.org/019kgqr73","country_code":"US","type":"education","lineage":["https://openalex.org/I189196454"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sajal Das","raw_affiliation_strings":["CReWMaN Lab, Department of Computer Science and Engineering,","CReWMaN Lab, Department of Computer Science and Engineering, The University of Texas at Arlington, Arlington, TX#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CReWMaN Lab, Department of Computer Science and Engineering,","institution_ids":[]},{"raw_affiliation_string":"CReWMaN Lab, Department of Computer Science and Engineering, The University of Texas at Arlington, Arlington, TX#TAB#","institution_ids":["https://openalex.org/I189196454"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I189196454"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1136891,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"601","last_page":"614"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9976000189781189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13187","display_name":"Diffusion and Search Dynamics","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/nucleosome","display_name":"Nucleosome","score":0.929479718208313},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.6402515172958374},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5937551259994507},{"id":"https://openalex.org/keywords/linker-dna","display_name":"Linker DNA","score":0.5797480344772339},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4973352253437042},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.4783729612827301},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.4671066999435425},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3865235149860382},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3810884356498718},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.36499616503715515},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34641408920288086},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3156292736530304},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2674139738082886}],"concepts":[{"id":"https://openalex.org/C84772758","wikidata":"https://www.wikidata.org/wiki/Q271794","display_name":"Nucleosome","level":4,"score":0.929479718208313},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.6402515172958374},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5937551259994507},{"id":"https://openalex.org/C193646685","wikidata":"https://www.wikidata.org/wiki/Q1826830","display_name":"Linker DNA","level":5,"score":0.5797480344772339},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4973352253437042},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.4783729612827301},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.4671066999435425},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3865235149860382},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3810884356498718},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.36499616503715515},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34641408920288086},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3156292736530304},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2674139738082886},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-72031-7_55","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72031-7_55","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W114148695","https://openalex.org/W400670110","https://openalex.org/W1565750463","https://openalex.org/W1964318436","https://openalex.org/W1981397859","https://openalex.org/W2002376004","https://openalex.org/W2002583673","https://openalex.org/W2055698723","https://openalex.org/W2061111901","https://openalex.org/W2061637728","https://openalex.org/W2069281865","https://openalex.org/W2072184454","https://openalex.org/W2084470701","https://openalex.org/W2084509375","https://openalex.org/W2102123683","https://openalex.org/W2102613806","https://openalex.org/W2102638002","https://openalex.org/W2102787760","https://openalex.org/W2103677726","https://openalex.org/W2115032859","https://openalex.org/W2126382449","https://openalex.org/W2139170300","https://openalex.org/W2144792857","https://openalex.org/W2145489727","https://openalex.org/W2149690584","https://openalex.org/W2157222407","https://openalex.org/W2158378515","https://openalex.org/W2162760560","https://openalex.org/W2504346845","https://openalex.org/W3008437073","https://openalex.org/W3147437828","https://openalex.org/W4236463097"],"related_works":["https://openalex.org/W2062514148","https://openalex.org/W2063259914","https://openalex.org/W2024605487","https://openalex.org/W4213216609","https://openalex.org/W3118167814","https://openalex.org/W2062722074","https://openalex.org/W2092186136","https://openalex.org/W2004767437","https://openalex.org/W2509901635","https://openalex.org/W2036280079"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-26T08:34:08.712188","created_date":"2025-10-10T00:00:00"}
