{"id":"https://openalex.org/W1532165337","doi":"https://doi.org/10.1007/978-3-540-72031-7_47","title":"Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice","display_name":"Delta: A Toolset for the Structural Analysis of Biological Sequences on a 3D Triangular Lattice","publication_year":2007,"publication_date":"2007-08-05","ids":{"openalex":"https://openalex.org/W1532165337","doi":"https://doi.org/10.1007/978-3-540-72031-7_47","mag":"1532165337"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-72031-7_47","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72031-7_47","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080563649","display_name":"Minghui Jiang","orcid":"https://orcid.org/0000-0003-1843-9292"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Minghui Jiang","raw_affiliation_strings":["Department of Computer Science, Utah State University, Logan, Utah 84322-4205, USA","Department of Computer Science, Utah State University, Logan Utah"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Utah State University, Logan, Utah 84322-4205, USA","institution_ids":["https://openalex.org/I121980950"]},{"raw_affiliation_string":"Department of Computer Science, Utah State University, Logan Utah","institution_ids":["https://openalex.org/I121980950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028730754","display_name":"Martin Mayne","orcid":null},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin Mayne","raw_affiliation_strings":["Department of Computer Science, Utah State University, Logan, Utah 84322-4205, USA","Department of Computer Science, Utah State University, Logan Utah"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Utah State University, Logan, Utah 84322-4205, USA","institution_ids":["https://openalex.org/I121980950"]},{"raw_affiliation_string":"Department of Computer Science, Utah State University, Logan Utah","institution_ids":["https://openalex.org/I121980950"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053130995","display_name":"J. R. Gillespie","orcid":"https://orcid.org/0000-0002-5075-1609"},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Gillespie","raw_affiliation_strings":["Department of Computer Science, Utah State University, Logan, Utah 84322-4205, USA","Department of Computer Science, Utah State University, Logan Utah"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Utah State University, Logan, Utah 84322-4205, USA","institution_ids":["https://openalex.org/I121980950"]},{"raw_affiliation_string":"Department of Computer Science, Utah State University, Logan Utah","institution_ids":["https://openalex.org/I121980950"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080563649"],"corresponding_institution_ids":["https://openalex.org/I121980950"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.1921,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.87797542,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"518","last_page":"529"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hexagonal-lattice","display_name":"Hexagonal lattice","score":0.6150681972503662},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.5739932656288147},{"id":"https://openalex.org/keywords/lattice","display_name":"Lattice (music)","score":0.5625656247138977},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5303495526313782},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5253897309303284},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.5075358152389526},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4474959075450897},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44494369626045227},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3492177724838257},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.3332677483558655},{"id":"https://openalex.org/keywords/crystallography","display_name":"Crystallography","score":0.32281261682510376},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.3221052289009094},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27937573194503784},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24082079529762268},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2368066906929016},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.23466825485229492},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.19687160849571228},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10894942283630371},{"id":"https://openalex.org/keywords/structural-engineering","display_name":"Structural engineering","score":0.09308189153671265},{"id":"https://openalex.org/keywords/condensed-matter-physics","display_name":"Condensed matter physics","score":0.07920002937316895},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.07600858807563782}],"concepts":[{"id":"https://openalex.org/C90626534","wikidata":"https://www.wikidata.org/wiki/Q4523381","display_name":"Hexagonal lattice","level":3,"score":0.6150681972503662},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.5739932656288147},{"id":"https://openalex.org/C2781204021","wikidata":"https://www.wikidata.org/wiki/Q6497091","display_name":"Lattice (music)","level":2,"score":0.5625656247138977},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5303495526313782},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5253897309303284},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.5075358152389526},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4474959075450897},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44494369626045227},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3492177724838257},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.3332677483558655},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.32281261682510376},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.3221052289009094},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27937573194503784},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24082079529762268},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2368066906929016},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.23466825485229492},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.19687160849571228},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10894942283630371},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.09308189153671265},{"id":"https://openalex.org/C26873012","wikidata":"https://www.wikidata.org/wiki/Q214781","display_name":"Condensed matter physics","level":1,"score":0.07920002937316895},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.07600858807563782},{"id":"https://openalex.org/C155355069","wikidata":"https://www.wikidata.org/wiki/Q575224","display_name":"Antiferromagnetism","level":2,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-72031-7_47","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72031-7_47","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.103.4900","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.103.4900","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.usu.edu/~mjiang/delta/JMG_isbra_07.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1481166764","https://openalex.org/W1511408336","https://openalex.org/W1543796220","https://openalex.org/W1585284295","https://openalex.org/W1589421353","https://openalex.org/W1600463518","https://openalex.org/W1602012035","https://openalex.org/W1758149641","https://openalex.org/W1968245790","https://openalex.org/W1974900495","https://openalex.org/W1981777358","https://openalex.org/W1987923072","https://openalex.org/W1993968482","https://openalex.org/W1995627618","https://openalex.org/W2009175282","https://openalex.org/W2013842855","https://openalex.org/W2014989101","https://openalex.org/W2017076960","https://openalex.org/W2017965868","https://openalex.org/W2024060531","https://openalex.org/W2025763720","https://openalex.org/W2026211446","https://openalex.org/W2040015982","https://openalex.org/W2040050205","https://openalex.org/W2041397659","https://openalex.org/W2043274817","https://openalex.org/W2054931730","https://openalex.org/W2070783701","https://openalex.org/W2075702353","https://openalex.org/W2076756368","https://openalex.org/W2080382112","https://openalex.org/W2086509077","https://openalex.org/W2094661877","https://openalex.org/W2102046276","https://openalex.org/W2109297587","https://openalex.org/W2117552736","https://openalex.org/W2123241418","https://openalex.org/W2130793977","https://openalex.org/W2132614530","https://openalex.org/W2146922921","https://openalex.org/W2154811699","https://openalex.org/W2154943258","https://openalex.org/W2501059503","https://openalex.org/W2611927968"],"related_works":["https://openalex.org/W3047450301","https://openalex.org/W2558432341","https://openalex.org/W1975806245","https://openalex.org/W2345156963","https://openalex.org/W1971402940","https://openalex.org/W2919479895","https://openalex.org/W2131054067","https://openalex.org/W3196523453","https://openalex.org/W2033915845","https://openalex.org/W2021868453"],"abstract_inverted_index":null,"counts_by_year":[{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
