{"id":"https://openalex.org/W1483741134","doi":"https://doi.org/10.1007/978-3-540-72031-7_4","title":"Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming","display_name":"Efficiently Finding the Most Parsimonious Phylogenetic Tree Via Linear Programming","publication_year":2007,"publication_date":"2007-08-05","ids":{"openalex":"https://openalex.org/W1483741134","doi":"https://doi.org/10.1007/978-3-540-72031-7_4","mag":"1483741134"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-72031-7_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72031-7_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102049256","display_name":"Srinath Sridhar","orcid":null},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]},{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]}],"countries":["FR","US"],"is_corresponding":true,"raw_author_name":"Srinath Sridhar","raw_affiliation_strings":["Computer Science Department, Carnegie Mellon University,","Computer Science Department, Carnegie-Mellon University"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Carnegie Mellon University,","institution_ids":["https://openalex.org/I4210156583","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Computer Science Department, Carnegie-Mellon University","institution_ids":["https://openalex.org/I4210156583","https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075099631","display_name":"Fumei Lam","orcid":null},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fumei Lam","raw_affiliation_strings":["Tepper School of Business, Carnegie Mellon University,"],"affiliations":[{"raw_affiliation_string":"Tepper School of Business, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033930662","display_name":"Guy E. Blelloch","orcid":"https://orcid.org/0000-0003-0224-9187"},"institutions":[{"id":"https://openalex.org/I4210156583","display_name":"Laboratoire d'Informatique de Paris-Nord","ror":"https://ror.org/05g1zjw44","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I4210091279","https://openalex.org/I4210156583","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["FR","US"],"is_corresponding":false,"raw_author_name":"Guy E. Blelloch","raw_affiliation_strings":["Computer Science Department, Carnegie Mellon University,","Computer Science Department, Carnegie-Mellon University"],"affiliations":[{"raw_affiliation_string":"Computer Science Department, Carnegie Mellon University,","institution_ids":["https://openalex.org/I4210156583","https://openalex.org/I74973139"]},{"raw_affiliation_string":"Computer Science Department, Carnegie-Mellon University","institution_ids":["https://openalex.org/I4210156583","https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087844619","display_name":"R. Ravi","orcid":"https://orcid.org/0000-0001-7603-1207"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Ravi","raw_affiliation_strings":["Tepper School of Business, Carnegie Mellon University,"],"affiliations":[{"raw_affiliation_string":"Tepper School of Business, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051953313","display_name":"Russell Schwartz","orcid":"https://orcid.org/0000-0002-4970-2252"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Russell Schwartz","raw_affiliation_strings":["Department of Biological Sciences, Carnegie Mellon University,","Department of Biological Sciences Carnegie Mellon University"],"affiliations":[{"raw_affiliation_string":"Department of Biological Sciences, Carnegie Mellon University,","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Department of Biological Sciences Carnegie Mellon University","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5102049256"],"corresponding_institution_ids":["https://openalex.org/I4210156583","https://openalex.org/I74973139"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":5.4795,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.95290883,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"37","last_page":"48"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9793000221252441,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9722999930381775,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.7263797521591187},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6905427575111389},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5205144286155701},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.5095029473304749},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4967823624610901},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.48450347781181335},{"id":"https://openalex.org/keywords/variation","display_name":"Variation (astronomy)","score":0.44976338744163513},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.4294660687446594},{"id":"https://openalex.org/keywords/linear-programming","display_name":"Linear programming","score":0.41789448261260986},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.35594671964645386},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34999972581863403},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3484855592250824},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.34580785036087036},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15186524391174316},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11962991952896118}],"concepts":[{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.7263797521591187},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6905427575111389},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5205144286155701},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.5095029473304749},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4967823624610901},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.48450347781181335},{"id":"https://openalex.org/C2778334786","wikidata":"https://www.wikidata.org/wiki/Q1586270","display_name":"Variation (astronomy)","level":2,"score":0.44976338744163513},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.4294660687446594},{"id":"https://openalex.org/C41045048","wikidata":"https://www.wikidata.org/wiki/Q202843","display_name":"Linear programming","level":2,"score":0.41789448261260986},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.35594671964645386},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34999972581863403},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3484855592250824},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.34580785036087036},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15186524391174316},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11962991952896118},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C44870925","wikidata":"https://www.wikidata.org/wiki/Q37547","display_name":"Astrophysics","level":1,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1007/978-3-540-72031-7_4","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-72031-7_4","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:repository.cmu.edu:tepper-1376","is_oa":false,"landing_page_url":"http://repository.cmu.edu/cgi/viewcontent.cgi?article=1376&context=tepper","pdf_url":null,"source":{"id":"https://openalex.org/S4306400668","display_name":"Research Showcase @ Carnegie Mellon University (Carnegie Mellon University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I74973139","host_organization_name":"Carnegie Mellon University","host_organization_lineage":["https://openalex.org/I74973139"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Tepper School of Business","raw_type":"text"},{"id":"pmh:doi:10.1184/r1/6705293","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal contribution"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.467.7528","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.467.7528","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.71.3336","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.71.3336","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.cs.cmu.edu/~srinath/isbra07.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W55191700","https://openalex.org/W1005876121","https://openalex.org/W1509880503","https://openalex.org/W1527618424","https://openalex.org/W1549202508","https://openalex.org/W1576246148","https://openalex.org/W1589421353","https://openalex.org/W1689369637","https://openalex.org/W1834060250","https://openalex.org/W1847545842","https://openalex.org/W1875901059","https://openalex.org/W2001806320","https://openalex.org/W2008771115","https://openalex.org/W2011039300","https://openalex.org/W2020586530","https://openalex.org/W2028934496","https://openalex.org/W2035019485","https://openalex.org/W2045504542","https://openalex.org/W2048260909","https://openalex.org/W2056113107","https://openalex.org/W2058401000","https://openalex.org/W2074507113","https://openalex.org/W2075495614","https://openalex.org/W2079829897","https://openalex.org/W2083213362","https://openalex.org/W2097706568","https://openalex.org/W2100428244","https://openalex.org/W2103170067","https://openalex.org/W2110545225","https://openalex.org/W2112594285","https://openalex.org/W2114611642","https://openalex.org/W2155316689","https://openalex.org/W2156043130","https://openalex.org/W2166838615","https://openalex.org/W2247766769","https://openalex.org/W3199943451","https://openalex.org/W4205911826","https://openalex.org/W4230895240","https://openalex.org/W4241764762","https://openalex.org/W4388212639"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W3177062893","https://openalex.org/W4205930990","https://openalex.org/W1993799876","https://openalex.org/W3125143773","https://openalex.org/W2007032764","https://openalex.org/W803550684","https://openalex.org/W2917424786","https://openalex.org/W2785637779","https://openalex.org/W2483226803"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
