{"id":"https://openalex.org/W2022552785","doi":"https://doi.org/10.1007/978-3-540-71681-5_27","title":"Minimizing and Learning Energy Functions for Side-Chain Prediction","display_name":"Minimizing and Learning Energy Functions for Side-Chain Prediction","publication_year":2007,"publication_date":"2007-05-17","ids":{"openalex":"https://openalex.org/W2022552785","doi":"https://doi.org/10.1007/978-3-540-71681-5_27","mag":"2022552785"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-71681-5_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-71681-5_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022114369","display_name":"Chen Yanover","orcid":"https://orcid.org/0000-0003-3663-4286"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Chen Yanover","raw_affiliation_strings":["School of Computer Science and Engineering, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel","School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034150494","display_name":"Ora Schueler\u2010Furman","orcid":"https://orcid.org/0000-0002-1624-0362"},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ora Schueler-Furman","raw_affiliation_strings":["Department of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University of Jerusalem, 91120 Jerusalem, Israel","Department of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University of Jerusalem, Jerusalem, Israel#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University of Jerusalem, 91120 Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"Department of Molecular Genetics and Biotechnology, Hadassah Medical School, The Hebrew University of Jerusalem, Jerusalem, Israel#TAB#","institution_ids":["https://openalex.org/I197251160"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109588482","display_name":"Yair Weiss","orcid":null},"institutions":[{"id":"https://openalex.org/I197251160","display_name":"Hebrew University of Jerusalem","ror":"https://ror.org/03qxff017","country_code":"IL","type":"education","lineage":["https://openalex.org/I197251160"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yair Weiss","raw_affiliation_strings":["School of Computer Science and Engineering, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel","School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, The Hebrew University of Jerusalem, 91904 Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]},{"raw_affiliation_string":"School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel","institution_ids":["https://openalex.org/I197251160"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.3844,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.94165664,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"381","last_page":"395"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9915000200271606,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.5616682171821594},{"id":"https://openalex.org/keywords/energy-minimization","display_name":"Energy minimization","score":0.5442044138908386},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5287240147590637},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4738481640815735},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4638860821723938},{"id":"https://openalex.org/keywords/minification","display_name":"Minification","score":0.4503157138824463},{"id":"https://openalex.org/keywords/energy","display_name":"Energy (signal processing)","score":0.4481385052204132},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4083293080329895},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3747478127479553},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.367895245552063},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2825345993041992},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.1622447669506073},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10417824983596802},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09028500318527222}],"concepts":[{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.5616682171821594},{"id":"https://openalex.org/C14961307","wikidata":"https://www.wikidata.org/wiki/Q5377176","display_name":"Energy minimization","level":2,"score":0.5442044138908386},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5287240147590637},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4738481640815735},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4638860821723938},{"id":"https://openalex.org/C147764199","wikidata":"https://www.wikidata.org/wiki/Q6865248","display_name":"Minification","level":2,"score":0.4503157138824463},{"id":"https://openalex.org/C186370098","wikidata":"https://www.wikidata.org/wiki/Q442787","display_name":"Energy (signal processing)","level":2,"score":0.4481385052204132},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4083293080329895},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3747478127479553},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.367895245552063},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2825345993041992},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.1622447669506073},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10417824983596802},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09028500318527222},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-71681-5_27","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-71681-5_27","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.8700000047683716}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W10021998","https://openalex.org/W134466717","https://openalex.org/W1957358235","https://openalex.org/W1970157506","https://openalex.org/W1972728295","https://openalex.org/W1974130578","https://openalex.org/W1977689937","https://openalex.org/W1981276685","https://openalex.org/W1987977716","https://openalex.org/W2002806284","https://openalex.org/W2014693209","https://openalex.org/W2015403140","https://openalex.org/W2019599312","https://openalex.org/W2025146643","https://openalex.org/W2027189612","https://openalex.org/W2028843689","https://openalex.org/W2082221689","https://openalex.org/W2100034662","https://openalex.org/W2101712920","https://openalex.org/W2105644991","https://openalex.org/W2108619558","https://openalex.org/W2109189215","https://openalex.org/W2111387452","https://openalex.org/W2134059200","https://openalex.org/W2134731229","https://openalex.org/W2135815512","https://openalex.org/W2140248032","https://openalex.org/W2143524933","https://openalex.org/W2147880316","https://openalex.org/W2150734839","https://openalex.org/W2151322733","https://openalex.org/W2156615793","https://openalex.org/W2158307923","https://openalex.org/W2159080219","https://openalex.org/W2164918853","https://openalex.org/W2166317516","https://openalex.org/W2170580967"],"related_works":["https://openalex.org/W1518796764","https://openalex.org/W2022006488","https://openalex.org/W2118841422","https://openalex.org/W347294048","https://openalex.org/W2226908759","https://openalex.org/W1899667806","https://openalex.org/W2061881449","https://openalex.org/W1981231660","https://openalex.org/W1483822002","https://openalex.org/W2351116219"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
