{"id":"https://openalex.org/W2113120594","doi":"https://doi.org/10.1007/978-3-540-71233-6_23","title":"Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models","display_name":"Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models","publication_year":2007,"publication_date":"2007-05-21","ids":{"openalex":"https://openalex.org/W2113120594","doi":"https://doi.org/10.1007/978-3-540-71233-6_23","mag":"2113120594"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-71233-6_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-71233-6_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060232841","display_name":"Piero Fariselli","orcid":"https://orcid.org/0000-0003-1811-4762"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Piero Fariselli","raw_affiliation_strings":["Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, via Irnerio 42, 40126 Bologna, Italy","Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, via Irnerio 42, 40126 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015521782","display_name":"Daniele Molinini","orcid":"https://orcid.org/0000-0001-5783-7395"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Daniele Molinini","raw_affiliation_strings":["Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, via Irnerio 42, 40126 Bologna, Italy","Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, via Irnerio 42, 40126 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053410790","display_name":"Rita Casadio","orcid":"https://orcid.org/0000-0002-7462-7039"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rita Casadio","raw_affiliation_strings":["Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, via Irnerio 42, 40126 Bologna, Italy","Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, Bologna, Italy"],"affiliations":[{"raw_affiliation_string":"Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, via Irnerio 42, 40126 Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Laboratory of Biocomputing, CIRB/Department of Biology, University of Bologna, Bologna, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5083542637","display_name":"Anders Krogh","orcid":"https://orcid.org/0000-0002-5147-6282"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Anders Krogh","raw_affiliation_strings":["The Bioinformatics Centre, Inst. of Molecular Biology and Physiology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark","The Bioinformatics Centre, Inst. of Molecular Biology and Physiology, University of Copenhagen, Copenhagen, Denmark"],"affiliations":[{"raw_affiliation_string":"The Bioinformatics Centre, Inst. of Molecular Biology and Physiology, University of Copenhagen, Universitetsparken 15, 2100 Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"The Bioinformatics Centre, Inst. of Molecular Biology and Physiology, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5060232841"],"corresponding_institution_ids":["https://openalex.org/I9360294"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.0961,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.8008937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"292","last_page":"302"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coiled-coil","display_name":"Coiled coil","score":0.8705484867095947},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.6865083575248718},{"id":"https://openalex.org/keywords/electromagnetic-coil","display_name":"Electromagnetic coil","score":0.653409481048584},{"id":"https://openalex.org/keywords/structural-motif","display_name":"Structural motif","score":0.5517716407775879},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5498408079147339},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.49429798126220703},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.4879891276359558},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4433262348175049},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.43207767605781555},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.43110769987106323},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.38072097301483154},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.35387858748435974},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33532387018203735},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26357513666152954},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.24348518252372742},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.18793824315071106},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.15359428524971008},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09611979126930237},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.09328135848045349}],"concepts":[{"id":"https://openalex.org/C55988834","wikidata":"https://www.wikidata.org/wiki/Q903650","display_name":"Coiled coil","level":2,"score":0.8705484867095947},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.6865083575248718},{"id":"https://openalex.org/C30403606","wikidata":"https://www.wikidata.org/wiki/Q2981904","display_name":"Electromagnetic coil","level":2,"score":0.653409481048584},{"id":"https://openalex.org/C132677234","wikidata":"https://www.wikidata.org/wiki/Q3273544","display_name":"Structural motif","level":2,"score":0.5517716407775879},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5498408079147339},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.49429798126220703},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.4879891276359558},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4433262348175049},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.43207767605781555},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.43110769987106323},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.38072097301483154},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.35387858748435974},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33532387018203735},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26357513666152954},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.24348518252372742},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.18793824315071106},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.15359428524971008},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09611979126930237},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.09328135848045349},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":6,"locations":[{"id":"doi:10.1007/978-3-540-71233-6_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-71233-6_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.385.9113","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.385.9113","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://people.binf.ku.dk/krogh/publications/pdf/FariselliEtal07.pdf","raw_type":"text"},{"id":"pmh:oai:cris.unibo.it:11585/46149","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/46149","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"pmh:oai:cris.unibo.it:11585/897852","is_oa":false,"landing_page_url":"http://hdl.handle.net/11585/897852","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/bookPart"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/1078016c-7818-4251-a4a7-848b305d030d","is_oa":false,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/1078016c-7818-4251-a4a7-848b305d030d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Fariselli , P , Molinini , D , Casadio , R & Krogh , A 2007 , Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models . in S Hochreiter & R Wagner (eds) , Bioinformatics Research and Development : First International Conference, BIRD 2007 Proceedings . Springer , Lecture Notes in Bioinformatics , vol. 4414 , pp. 292-302 , 1st International Conference on Bioinformatics Research and Development, BIRD 2007 , Berlin , Germany , 12/03/2007 . https://doi.org/10.1007/978-3-540-71233-6_23","raw_type":"contributionToPeriodical"},{"id":"pmh:oai:www.research.unipd.it:11577/3184028","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3184028","pdf_url":null,"source":{"id":"https://openalex.org/S4377196283","display_name":"Research Padua  Archive (University of Padua)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1961177618","https://openalex.org/W1965231243","https://openalex.org/W1998130142","https://openalex.org/W2008708467","https://openalex.org/W2009570821","https://openalex.org/W2010822247","https://openalex.org/W2024645073","https://openalex.org/W2032155561","https://openalex.org/W2080851686","https://openalex.org/W2117709367","https://openalex.org/W2119891507","https://openalex.org/W2125725297","https://openalex.org/W2129508689","https://openalex.org/W2147905080","https://openalex.org/W2158623906"],"related_works":["https://openalex.org/W2016162029","https://openalex.org/W2312941794","https://openalex.org/W2392709156","https://openalex.org/W2114394718","https://openalex.org/W2037169923","https://openalex.org/W2125261775","https://openalex.org/W2044296950","https://openalex.org/W2122480363","https://openalex.org/W2002844124","https://openalex.org/W2032155561"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
