{"id":"https://openalex.org/W1815392837","doi":"https://doi.org/10.1007/978-3-540-70600-7_36","title":"Efficient Seeding Techniques for Protein Similarity Search","display_name":"Efficient Seeding Techniques for Protein Similarity Search","publication_year":2008,"publication_date":"2008-08-29","ids":{"openalex":"https://openalex.org/W1815392837","doi":"https://doi.org/10.1007/978-3-540-70600-7_36","mag":"1815392837"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-70600-7_36","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-70600-7_36","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004471892","display_name":"Mikhail Roytberg","orcid":"https://orcid.org/0000-0002-5848-367X"},"institutions":[{"id":"https://openalex.org/I4210159227","display_name":"Institute of Mathematical Problems of Biology","ror":"https://ror.org/04xtpdj18","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601","https://openalex.org/I4210159227"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Mikhail Roytberg","raw_affiliation_strings":["Institute of Mathematical Problems in Biology, Pushchino, Moscow Region, Russia","Institute of Mathematical Problems in Biology, Pushchino"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematical Problems in Biology, Pushchino, Moscow Region, Russia","institution_ids":["https://openalex.org/I4210159227"]},{"raw_affiliation_string":"Institute of Mathematical Problems in Biology, Pushchino","institution_ids":["https://openalex.org/I4210159227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071617273","display_name":"Anna Gambin","orcid":"https://orcid.org/0000-0003-3476-3017"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Anna Gambin","raw_affiliation_strings":["Institute of Informatics, Warsaw University, Poland","Warsaw University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Warsaw University, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Warsaw University","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055679303","display_name":"Laurent No\u00e9","orcid":"https://orcid.org/0000-0002-1170-8376"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210160005","display_name":"Computer Science Laboratory of Lille","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210160005"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Laurent No\u00e9","raw_affiliation_strings":["LIFL/CNRS/INRIA, Villeneuve d\u2019Ascq C\u00e9dex, France","LIFL/CNRS/INRIA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIFL/CNRS/INRIA, Villeneuve d\u2019Ascq C\u00e9dex, France","institution_ids":["https://openalex.org/I4210160005","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LIFL/CNRS/INRIA","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102789796","display_name":"S\u0142awomir Lasota","orcid":"https://orcid.org/0000-0001-8674-4470"},"institutions":[{"id":"https://openalex.org/I4654613","display_name":"University of Warsaw","ror":"https://ror.org/039bjqg32","country_code":"PL","type":"education","lineage":["https://openalex.org/I4654613"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"S\u0142awomir Lasota","raw_affiliation_strings":["Institute of Informatics, Warsaw University, Poland","Warsaw University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Informatics, Warsaw University, Poland","institution_ids":["https://openalex.org/I4654613"]},{"raw_affiliation_string":"Warsaw University","institution_ids":["https://openalex.org/I4654613"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112845144","display_name":"Eugenia Furletova","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159227","display_name":"Institute of Mathematical Problems of Biology","ror":"https://ror.org/04xtpdj18","country_code":"RU","type":"facility","lineage":["https://openalex.org/I1313323035","https://openalex.org/I4210124601","https://openalex.org/I4210159227"]}],"countries":["RU"],"is_corresponding":false,"raw_author_name":"Eugenia Furletova","raw_affiliation_strings":["Institute of Mathematical Problems in Biology, Pushchino, Moscow Region, Russia","Institute of Mathematical Problems in Biology, Pushchino"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Mathematical Problems in Biology, Pushchino, Moscow Region, Russia","institution_ids":["https://openalex.org/I4210159227"]},{"raw_affiliation_string":"Institute of Mathematical Problems in Biology, Pushchino","institution_ids":["https://openalex.org/I4210159227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036326710","display_name":"Ewa Szczurek","orcid":"https://orcid.org/0000-0002-1320-6695"},"institutions":[{"id":"https://openalex.org/I4210142260","display_name":"Max Planck Institute for Molecular Genetics","ror":"https://ror.org/03ate3e03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210142260"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ewa Szczurek","raw_affiliation_strings":["Max Planck Institute for Molecular Genetics, Computational Molecular Biology, Berlin, Germany","Max Planck Institute for Molecular Genetics, Computational Molecular Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Computational Molecular Biology, Berlin, Germany","institution_ids":["https://openalex.org/I4210142260"]},{"raw_affiliation_string":"Max Planck Institute for Molecular Genetics, Computational Molecular Biology","institution_ids":["https://openalex.org/I4210142260"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012626407","display_name":"Gr\u00e9gory Kucherov","orcid":"https://orcid.org/0000-0001-5899-5424"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210160005","display_name":"Computer Science Laboratory of Lille","ror":null,"country_code":"FR","type":null,"lineage":["https://openalex.org/I4210160005"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gregory Kucherov","raw_affiliation_strings":["LIFL/CNRS/INRIA, Villeneuve d\u2019Ascq C\u00e9dex, France","LIFL/CNRS/INRIA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"LIFL/CNRS/INRIA, Villeneuve d\u2019Ascq C\u00e9dex, France","institution_ids":["https://openalex.org/I4210160005","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"LIFL/CNRS/INRIA","institution_ids":["https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"466","last_page":"478"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/seeding","display_name":"Seeding","score":0.8436455726623535},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.673248291015625},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5488966703414917},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.5279910564422607},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.48644495010375977},{"id":"https://openalex.org/keywords/bernoullis-principle","display_name":"Bernoulli's principle","score":0.4780885875225067},{"id":"https://openalex.org/keywords/alphabet","display_name":"Alphabet","score":0.4719770848751068},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4498788118362427},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4489172101020813},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4200786352157593},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.35910093784332275},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3268553614616394},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1991358995437622},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.15506023168563843},{"id":"https://openalex.org/keywords/agronomy","display_name":"Agronomy","score":0.06150093674659729}],"concepts":[{"id":"https://openalex.org/C36248471","wikidata":"https://www.wikidata.org/wiki/Q7445669","display_name":"Seeding","level":2,"score":0.8436455726623535},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.673248291015625},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5488966703414917},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.5279910564422607},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.48644495010375977},{"id":"https://openalex.org/C152361515","wikidata":"https://www.wikidata.org/wiki/Q181328","display_name":"Bernoulli's principle","level":2,"score":0.4780885875225067},{"id":"https://openalex.org/C112876837","wikidata":"https://www.wikidata.org/wiki/Q837518","display_name":"Alphabet","level":2,"score":0.4719770848751068},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4498788118362427},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4489172101020813},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4200786352157593},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35910093784332275},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3268553614616394},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1991358995437622},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.15506023168563843},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.06150093674659729},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C146978453","wikidata":"https://www.wikidata.org/wiki/Q3798668","display_name":"Aerospace engineering","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-70600-7_36","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-70600-7_36","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.372.8499","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.372.8499","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal.archives-ouvertes.fr/docs/00/33/55/64/PDF/paper.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W17603131","https://openalex.org/W173824393","https://openalex.org/W1538909774","https://openalex.org/W1955121107","https://openalex.org/W1972051891","https://openalex.org/W1975670646","https://openalex.org/W1982496832","https://openalex.org/W1992209615","https://openalex.org/W2055043387","https://openalex.org/W2058415829","https://openalex.org/W2068235693","https://openalex.org/W2097892623","https://openalex.org/W2106811687","https://openalex.org/W2109692166","https://openalex.org/W2123317029","https://openalex.org/W2128591967","https://openalex.org/W2129497695","https://openalex.org/W2131010376","https://openalex.org/W2139371638","https://openalex.org/W2143210482","https://openalex.org/W2158714788","https://openalex.org/W2167677447","https://openalex.org/W3021319303","https://openalex.org/W3098719287"],"related_works":["https://openalex.org/W2352942191","https://openalex.org/W2390371481","https://openalex.org/W2373196487","https://openalex.org/W2515349569","https://openalex.org/W2315981300","https://openalex.org/W1987103269","https://openalex.org/W2389665570","https://openalex.org/W2366106936","https://openalex.org/W2332619769","https://openalex.org/W2908776801"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}