{"id":"https://openalex.org/W1522609417","doi":"https://doi.org/10.1007/978-3-540-70600-7_33","title":"Indexing Factors in DNA/RNA Sequences","display_name":"Indexing Factors in DNA/RNA Sequences","publication_year":2008,"publication_date":"2008-08-29","ids":{"openalex":"https://openalex.org/W1522609417","doi":"https://doi.org/10.1007/978-3-540-70600-7_33","mag":"1522609417"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-70600-7_33","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-70600-7_33","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024578874","display_name":"Tom\u00e1\u0161 Flouri","orcid":"https://orcid.org/0000-0002-8474-9507"},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Tom\u00e1\u0161 Flouri","raw_affiliation_strings":["Department of Computer Science & Engineering, Czech Technical University in Prague, Czech Republic","Czech Technical Univ. in Prague"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, Czech Technical University in Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]},{"raw_affiliation_string":"Czech Technical Univ. in Prague","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058155947","display_name":"Costas S. Iliopoulos","orcid":"https://orcid.org/0000-0003-3909-0077"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Costas Iliopoulos","raw_affiliation_strings":["Algorithm Design Group Department of Computer Science, King\u2019s College London, Strand, London, England","King\u2019s College London Strand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithm Design Group Department of Computer Science, King\u2019s College London, Strand, London, England","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"King\u2019s College London Strand","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029174615","display_name":"M. Sohel Rahman","orcid":"https://orcid.org/0000-0001-9419-6478"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"M. Sohel Rahman","raw_affiliation_strings":["Algorithm Design Group Department of Computer Science, King\u2019s College London, Strand, London, England","King\u2019s College London Strand"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Algorithm Design Group Department of Computer Science, King\u2019s College London, Strand, London, England","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"King\u2019s College London Strand","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087101798","display_name":"Ladislav Vagner","orcid":null},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Ladislav Vagner","raw_affiliation_strings":["Department of Computer Science & Engineering, Czech Technical University in Prague, Czech Republic","Czech Technical Univ. in Prague"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science & Engineering, Czech Technical University in Prague, Czech Republic","institution_ids":["https://openalex.org/I44504214"]},{"raw_affiliation_string":"Czech Technical Univ. in Prague","institution_ids":["https://openalex.org/I44504214"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075827241","display_name":"Michal Vor\u00e1\u010dek","orcid":null},"institutions":[{"id":"https://openalex.org/I44504214","display_name":"Czech Technical University in Prague","ror":"https://ror.org/03kqpb082","country_code":"CZ","type":"education","lineage":["https://openalex.org/I44504214"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Michal Vor\u00e1\u010dek","raw_affiliation_strings":["Czech Technical Univ. in Prague"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Czech Technical Univ. in Prague","institution_ids":["https://openalex.org/I44504214"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"436","last_page":"445"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/suffix","display_name":"Suffix","score":0.8317317962646484},{"id":"https://openalex.org/keywords/degenerate-energy-levels","display_name":"Degenerate energy levels","score":0.7264769077301025},{"id":"https://openalex.org/keywords/search-engine-indexing","display_name":"Search engine indexing","score":0.6494237780570984},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.48843303322792053},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.4686920642852783},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.4378906488418579},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.43786153197288513},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4357434809207916},{"id":"https://openalex.org/keywords/type","display_name":"Type (biology)","score":0.4125964939594269},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.354171484708786},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34880736470222473},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.33237582445144653},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.28977862000465393},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.23847618699073792},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20927298069000244},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1338798701763153},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0824589729309082}],"concepts":[{"id":"https://openalex.org/C2779804580","wikidata":"https://www.wikidata.org/wiki/Q102047","display_name":"Suffix","level":2,"score":0.8317317962646484},{"id":"https://openalex.org/C72319582","wikidata":"https://www.wikidata.org/wiki/Q584304","display_name":"Degenerate energy levels","level":2,"score":0.7264769077301025},{"id":"https://openalex.org/C75165309","wikidata":"https://www.wikidata.org/wiki/Q2258979","display_name":"Search engine indexing","level":2,"score":0.6494237780570984},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.48843303322792053},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.4686920642852783},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.4378906488418579},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.43786153197288513},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4357434809207916},{"id":"https://openalex.org/C2777299769","wikidata":"https://www.wikidata.org/wiki/Q3707858","display_name":"Type (biology)","level":2,"score":0.4125964939594269},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.354171484708786},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34880736470222473},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.33237582445144653},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.28977862000465393},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.23847618699073792},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20927298069000244},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1338798701763153},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0824589729309082},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-70600-7_33","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-70600-7_33","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},{"id":"pmh:oai:kclpure.kcl.ac.uk:publications/5fa8a10e-7410-4b4a-9686-a32fb7673678","is_oa":false,"landing_page_url":"https://kclpure.kcl.ac.uk/portal/en/publications/5fa8a10e-7410-4b4a-9686-a32fb7673678","pdf_url":null,"source":{"id":"https://openalex.org/S4306400216","display_name":"Research Portal (King's College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I183935753","host_organization_name":"King's College London","host_organization_lineage":["https://openalex.org/I183935753"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Flouri, T, Iliopoulos, C, Rahman, M, Vagner, L & Voracek, M 2008, Indexing Factors in DNA/RNA Sequences . in Bioinformatics Research and Development - Second International Conference, BIRD 2008 Vienna, Austria, July 7-9, 2008. pp. 436 - 445.","raw_type":"contributionToPeriodical"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W421997344","https://openalex.org/W1489358333","https://openalex.org/W1643069680","https://openalex.org/W1714821586","https://openalex.org/W1978255406","https://openalex.org/W2015292449","https://openalex.org/W2055043387","https://openalex.org/W2089052894","https://openalex.org/W2128591967","https://openalex.org/W2229868750"],"related_works":["https://openalex.org/W96331545","https://openalex.org/W2073921136","https://openalex.org/W2003608043","https://openalex.org/W2583658747","https://openalex.org/W2160738675","https://openalex.org/W2405892617","https://openalex.org/W1548907175","https://openalex.org/W3022556214","https://openalex.org/W2396668937","https://openalex.org/W1498395615"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
