{"id":"https://openalex.org/W2094108329","doi":"https://doi.org/10.1007/978-3-540-69828-9_12","title":"Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species","display_name":"Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species","publication_year":2008,"publication_date":"2008-08-12","ids":{"openalex":"https://openalex.org/W2094108329","doi":"https://doi.org/10.1007/978-3-540-69828-9_12","mag":"2094108329"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-69828-9_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-69828-9_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://iris.unil.ch/bitstreams/d686ae82-fcca-4014-b961-5703fe5b41b7/download","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039477407","display_name":"Frederic Bastian","orcid":"https://orcid.org/0000-0002-9415-5104"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Frederic Bastian","raw_affiliation_strings":["Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","Swiss institute of bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss institute of bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032059598","display_name":"Gilles Parmentier","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Gilles Parmentier","raw_affiliation_strings":["Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","Swiss institute of bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss institute of bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064447970","display_name":"Julien Roux","orcid":"https://orcid.org/0000-0002-4192-5099"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Julien Roux","raw_affiliation_strings":["Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","Swiss institute of bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss institute of bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039131441","display_name":"S\u00e9bastien Moretti","orcid":"https://orcid.org/0000-0003-3947-488X"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sebastien Moretti","raw_affiliation_strings":["Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","Swiss institute of bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss institute of bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089653205","display_name":"Vincent Laudet","orcid":"https://orcid.org/0000-0003-4022-4175"},"institutions":[{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I4210125167","display_name":"Institut de G\u00e9nomique Fonctionnelle de Lyon","ror":"https://ror.org/038fcbc74","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I203339264","https://openalex.org/I4210088668","https://openalex.org/I4210125167"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Laudet","raw_affiliation_strings":["Institut F\u00e9d\u00e9ratif, Universit\u00e9 de Lyon, Institut de G\u00e9nomique Fonctionnelle de Lyon, ENS Lyon, Universit\u00e9 Lyon 1, CNRS, INRA, France"],"affiliations":[{"raw_affiliation_string":"Institut F\u00e9d\u00e9ratif, Universit\u00e9 de Lyon, Institut de G\u00e9nomique Fonctionnelle de Lyon, ENS Lyon, Universit\u00e9 Lyon 1, CNRS, INRA, France","institution_ids":["https://openalex.org/I113428412","https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210125167"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054250703","display_name":"Marc Robinson\u2010Rechavi","orcid":"https://orcid.org/0000-0002-3437-3329"},"institutions":[{"id":"https://openalex.org/I97565354","display_name":"University of Lausanne","ror":"https://ror.org/019whta54","country_code":"CH","type":"education","lineage":["https://openalex.org/I97565354"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Marc Robinson-Rechavi","raw_affiliation_strings":["Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","Swiss institute of bioinformatics, Lausanne, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolution, University of Lausanne, quartier UNIL-Sorge, Lausanne, Switzerland","institution_ids":["https://openalex.org/I97565354"]},{"raw_affiliation_string":"Swiss institute of bioinformatics, Lausanne, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5039477407"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I97565354"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":10.7517,"has_fulltext":true,"cited_by_count":198,"citation_normalized_percentile":{"value":0.9824756,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":null,"issue":null,"first_page":"124","last_page":"131"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5948229432106018},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.5556713938713074},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5299312472343445},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49274685978889465},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.4608689248561859},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.44908446073532104},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4347790777683258},{"id":"https://openalex.org/keywords/expression","display_name":"Expression (computer science)","score":0.4224369525909424},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.4101221561431885},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33860617876052856},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32594722509384155},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.2670556306838989},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.22982105612754822},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08906036615371704}],"concepts":[{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5948229432106018},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.5556713938713074},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5299312472343445},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49274685978889465},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.4608689248561859},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.44908446073532104},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4347790777683258},{"id":"https://openalex.org/C90559484","wikidata":"https://www.wikidata.org/wiki/Q778379","display_name":"Expression (computer science)","level":2,"score":0.4224369525909424},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.4101221561431885},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33860617876052856},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32594722509384155},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2670556306838989},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.22982105612754822},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08906036615371704},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-69828-9_12","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-69828-9_12","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:iris.unil.ch:iris/73690","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/73690","pdf_url":"https://iris.unil.ch/bitstreams/d686ae82-fcca-4014-b961-5703fe5b41b7/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"},{"id":"pmh:oai:serval.unil.ch:BIB_5A6F9D63F92D","is_oa":true,"landing_page_url":"https://serval.unil.ch/notice/serval:BIB_5A6F9D63F92D","pdf_url":null,"source":{"id":"https://openalex.org/S4306401797","display_name":"SERVAL (Universit\u00e9 de Lausanne)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210093590","host_organization_name":"Swiss School of Archaeology in Greece","host_organization_lineage":["https://openalex.org/I4210093590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Data Integration in Life Sciences, vol. 5109, pp. 124-131","raw_type":"info:eu-repo/semantics/submittedVersion"}],"best_oa_location":{"id":"pmh:oai:iris.unil.ch:iris/73690","is_oa":true,"landing_page_url":"https://iris.unil.ch/handle/iris/73690","pdf_url":"https://iris.unil.ch/bitstreams/d686ae82-fcca-4014-b961-5703fe5b41b7/download","source":{"id":"https://openalex.org/S7407055444","display_name":"IRIS","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference paper"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.5699999928474426}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2094108329.pdf","grobid_xml":"https://content.openalex.org/works/W2094108329.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1497048898","https://openalex.org/W1581104670","https://openalex.org/W1778288170","https://openalex.org/W1973614663","https://openalex.org/W1984996211","https://openalex.org/W2017994420","https://openalex.org/W2059224185","https://openalex.org/W2063593640","https://openalex.org/W2096525273","https://openalex.org/W2103017472","https://openalex.org/W2109453886","https://openalex.org/W2113142309","https://openalex.org/W2113275510","https://openalex.org/W2118957901","https://openalex.org/W2123384627","https://openalex.org/W2133045719","https://openalex.org/W2135724909","https://openalex.org/W2135750955","https://openalex.org/W2143129697","https://openalex.org/W2146007051","https://openalex.org/W2146516445","https://openalex.org/W2149480636","https://openalex.org/W2156340505","https://openalex.org/W2156343366","https://openalex.org/W2159049360","https://openalex.org/W2611894836","https://openalex.org/W4210241463","https://openalex.org/W4236241609","https://openalex.org/W4239678514"],"related_works":["https://openalex.org/W2003333417","https://openalex.org/W2378862226","https://openalex.org/W118236634","https://openalex.org/W2355326633","https://openalex.org/W2804669904","https://openalex.org/W2149777447","https://openalex.org/W2347456287","https://openalex.org/W2121651557","https://openalex.org/W2782969047","https://openalex.org/W1983454176"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":25},{"year":2019,"cited_by_count":32},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":19},{"year":2016,"cited_by_count":23},{"year":2015,"cited_by_count":14},{"year":2014,"cited_by_count":14},{"year":2013,"cited_by_count":7},{"year":2012,"cited_by_count":9}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
