{"id":"https://openalex.org/W1513594994","doi":"https://doi.org/10.1007/978-3-540-69389-5_16","title":"A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data","display_name":"A Streamlined and Generalized Analysis of Chromatin ImmunoPrecipitation Paired-End diTag Data","publication_year":2008,"publication_date":"2008-01-01","ids":{"openalex":"https://openalex.org/W1513594994","doi":"https://doi.org/10.1007/978-3-540-69389-5_16","mag":"1513594994"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-69389-5_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-69389-5_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5044292813","display_name":"Vinsensius B. Vega","orcid":null},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Vinsensius B. Vega","raw_affiliation_strings":["Computational and Mathematical Biology Group, Genome Institute of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Computational and Mathematical Biology Group, Genome Institute of Singapore, Singapore","institution_ids":["https://openalex.org/I66068411"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028790437","display_name":"Yijun Ruan","orcid":"https://orcid.org/0000-0001-5881-569X"},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Yijun Ruan","raw_affiliation_strings":["Clone and Sequencing Group, Genome Institute of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Clone and Sequencing Group, Genome Institute of Singapore, Singapore","institution_ids":["https://openalex.org/I66068411"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I66068411","display_name":"Genome Institute of Singapore","ror":"https://ror.org/05k8wg936","country_code":"SG","type":"facility","lineage":["https://openalex.org/I115228651","https://openalex.org/I2801752549","https://openalex.org/I66068411"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wing-Kin Sung","raw_affiliation_strings":["Computational and Mathematical Biology Group, Genome Institute of Singapore, Singapore"],"affiliations":[{"raw_affiliation_string":"Computational and Mathematical Biology Group, Genome Institute of Singapore, Singapore","institution_ids":["https://openalex.org/I66068411"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044292813"],"corresponding_institution_ids":["https://openalex.org/I66068411"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.344,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.83429459,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"130","last_page":"139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9878000020980835,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"Chromatin immunoprecipitation","score":0.868071436882019},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7059597969055176},{"id":"https://openalex.org/keywords/chromatin","display_name":"Chromatin","score":0.5428912043571472},{"id":"https://openalex.org/keywords/chip-sequencing","display_name":"ChIP-sequencing","score":0.5387030839920044},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5187342762947083},{"id":"https://openalex.org/keywords/immunoprecipitation","display_name":"Immunoprecipitation","score":0.4297967553138733},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4251355230808258},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.38604554533958435},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3692759871482849},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.3203047215938568},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2949993908405304},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27036207914352417},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25688114762306213},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.18207672238349915},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.09782576560974121},{"id":"https://openalex.org/keywords/chromatin-remodeling","display_name":"Chromatin remodeling","score":0.09346485137939453}],"concepts":[{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.868071436882019},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7059597969055176},{"id":"https://openalex.org/C83640560","wikidata":"https://www.wikidata.org/wiki/Q180951","display_name":"Chromatin","level":3,"score":0.5428912043571472},{"id":"https://openalex.org/C176619506","wikidata":"https://www.wikidata.org/wiki/Q5065899","display_name":"ChIP-sequencing","level":5,"score":0.5387030839920044},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5187342762947083},{"id":"https://openalex.org/C71829478","wikidata":"https://www.wikidata.org/wiki/Q901305","display_name":"Immunoprecipitation","level":3,"score":0.4297967553138733},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4251355230808258},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.38604554533958435},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3692759871482849},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3203047215938568},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2949993908405304},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27036207914352417},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25688114762306213},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.18207672238349915},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.09782576560974121},{"id":"https://openalex.org/C167227067","wikidata":"https://www.wikidata.org/wiki/Q5113739","display_name":"Chromatin remodeling","level":4,"score":0.09346485137939453}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-540-69389-5_16","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-69389-5_16","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W1971062749","https://openalex.org/W1980303046","https://openalex.org/W2026348021","https://openalex.org/W2026882865","https://openalex.org/W2032109237","https://openalex.org/W2072916763","https://openalex.org/W2101706357","https://openalex.org/W2110015307","https://openalex.org/W2112444654","https://openalex.org/W2118628540","https://openalex.org/W2124386744","https://openalex.org/W2125785650","https://openalex.org/W2131828032","https://openalex.org/W2141171810","https://openalex.org/W2149680578","https://openalex.org/W2160003307","https://openalex.org/W2171407623","https://openalex.org/W2247766769","https://openalex.org/W4232024617","https://openalex.org/W4248318091"],"related_works":["https://openalex.org/W1984632551","https://openalex.org/W2769829611","https://openalex.org/W10839406","https://openalex.org/W2765279222","https://openalex.org/W2910668538","https://openalex.org/W4297980211","https://openalex.org/W161291816","https://openalex.org/W1989995543","https://openalex.org/W2564946823","https://openalex.org/W4298113240"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
