{"id":"https://openalex.org/W1791710463","doi":"https://doi.org/10.1007/978-3-540-48540-7_2","title":"The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways","display_name":"The Pathalyzer: A Tool for Analysis of Signal Transduction Pathways","publication_year":2007,"publication_date":"2007-05-15","ids":{"openalex":"https://openalex.org/W1791710463","doi":"https://doi.org/10.1007/978-3-540-48540-7_2","mag":"1791710463"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-48540-7_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-48540-7_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009458897","display_name":"David L. Dill","orcid":null},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"David L. Dill","raw_affiliation_strings":["Stanford University, \u00a0","Stanford University"],"affiliations":[{"raw_affiliation_string":"Stanford University, \u00a0","institution_ids":["https://openalex.org/I97018004"]},{"raw_affiliation_string":"Stanford University","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047480366","display_name":"Merrill Knapp","orcid":"https://orcid.org/0000-0003-1939-8672"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Merrill A. Knapp","raw_affiliation_strings":["SRI International, \u00a0","SRI, International;"],"affiliations":[{"raw_affiliation_string":"SRI International, \u00a0","institution_ids":["https://openalex.org/I1298353152"]},{"raw_affiliation_string":"SRI, International;","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087991683","display_name":"Pamela Gage","orcid":null},"institutions":[{"id":"https://openalex.org/I4210091332","display_name":"Institute of High Pressure Physics","ror":"https://ror.org/00fb7yx07","country_code":"PL","type":"facility","lineage":["https://openalex.org/I4210091332","https://openalex.org/I99542240"]}],"countries":["PL"],"is_corresponding":false,"raw_author_name":"Pamela Gage","raw_affiliation_strings":["Highwire Press, \u00a0","Highwire Press#TAB#"],"affiliations":[{"raw_affiliation_string":"Highwire Press, \u00a0","institution_ids":["https://openalex.org/I4210091332"]},{"raw_affiliation_string":"Highwire Press#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090498111","display_name":"Carolyn Talcott","orcid":"https://orcid.org/0000-0003-2845-7144"},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carolyn Talcott","raw_affiliation_strings":["SRI International, \u00a0","SRI, International;"],"affiliations":[{"raw_affiliation_string":"SRI International, \u00a0","institution_ids":["https://openalex.org/I1298353152"]},{"raw_affiliation_string":"SRI, International;","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071474090","display_name":"Keith R. Laderoute","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith Laderoute","raw_affiliation_strings":["SRI International, \u00a0","SRI, International;"],"affiliations":[{"raw_affiliation_string":"SRI International, \u00a0","institution_ids":["https://openalex.org/I1298353152"]},{"raw_affiliation_string":"SRI, International;","institution_ids":["https://openalex.org/I1298353152"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003908930","display_name":"Patrick Lincoln","orcid":null},"institutions":[{"id":"https://openalex.org/I1298353152","display_name":"SRI International","ror":"https://ror.org/05s570m15","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1298353152"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick Lincoln","raw_affiliation_strings":["SRI International, \u00a0","SRI, International;"],"affiliations":[{"raw_affiliation_string":"SRI International, \u00a0","institution_ids":["https://openalex.org/I1298353152"]},{"raw_affiliation_string":"SRI, International;","institution_ids":["https://openalex.org/I1298353152"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5009458897"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":5.4795,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.95445562,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"11","last_page":"22"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11125","display_name":"Petri Nets in System Modeling","score":0.9767000079154968,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10142","display_name":"Formal Methods in Verification","score":0.9333000183105469,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/petri-net","display_name":"Petri net","score":0.7723729610443115},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6364820003509521},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.5314518213272095},{"id":"https://openalex.org/keywords/signal","display_name":"SIGNAL (programming language)","score":0.5190333127975464},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.45243528485298157},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.43557536602020264},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.38127514719963074},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.28562408685684204},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1895948052406311},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1754027009010315},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.12255677580833435},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.08488649129867554},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.05611759424209595}],"concepts":[{"id":"https://openalex.org/C38677869","wikidata":"https://www.wikidata.org/wiki/Q724168","display_name":"Petri net","level":2,"score":0.7723729610443115},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6364820003509521},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.5314518213272095},{"id":"https://openalex.org/C2779843651","wikidata":"https://www.wikidata.org/wiki/Q7390335","display_name":"SIGNAL (programming language)","level":2,"score":0.5190333127975464},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.45243528485298157},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.43557536602020264},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.38127514719963074},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.28562408685684204},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1895948052406311},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1754027009010315},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.12255677580833435},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.08488649129867554},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.05611759424209595}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-48540-7_2","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-48540-7_2","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.79.9142","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.79.9142","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://chicory.stanford.edu/PAPERS/pathalyzer.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W12256183","https://openalex.org/W67805937","https://openalex.org/W190590157","https://openalex.org/W1509607930","https://openalex.org/W1576770735","https://openalex.org/W1587138807","https://openalex.org/W1975954590","https://openalex.org/W1976195354","https://openalex.org/W1999916184","https://openalex.org/W2041197407","https://openalex.org/W2047496194","https://openalex.org/W2081556416","https://openalex.org/W2100486049","https://openalex.org/W2101011890","https://openalex.org/W2104855667","https://openalex.org/W2120926795","https://openalex.org/W2132801975","https://openalex.org/W2146367686","https://openalex.org/W2150908245","https://openalex.org/W2165178932","https://openalex.org/W2497128634","https://openalex.org/W2601586431","https://openalex.org/W2618896829","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W1551257573","https://openalex.org/W4230983483","https://openalex.org/W2132799268","https://openalex.org/W1980200158","https://openalex.org/W2154794415","https://openalex.org/W791317142","https://openalex.org/W2109094990","https://openalex.org/W1538101305","https://openalex.org/W2982241419","https://openalex.org/W2285444239"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
