{"id":"https://openalex.org/W2123378898","doi":"https://doi.org/10.1007/978-3-540-48540-7_19","title":"An Interaction-Dependent Model for Transcription Factor Binding","display_name":"An Interaction-Dependent Model for Transcription Factor Binding","publication_year":2007,"publication_date":"2007-05-15","ids":{"openalex":"https://openalex.org/W2123378898","doi":"https://doi.org/10.1007/978-3-540-48540-7_19","mag":"2123378898"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-48540-7_19","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-48540-7_19","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038370606","display_name":"Li\u2010San Wang","orcid":"https://orcid.org/0000-0002-3684-0031"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Li-San Wang","raw_affiliation_strings":["Department of Biology,","Department of Biology, University of Pennsylvania, Philadelphia, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology,","institution_ids":[]},{"raw_affiliation_string":"Department of Biology, University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038551920","display_name":"Shane T. Jensen","orcid":"https://orcid.org/0000-0003-0945-5725"},"institutions":[{"id":"https://openalex.org/I4210157222","display_name":"William P. Wharton Trust","ror":"https://ror.org/05vea6821","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210157222"]},{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shane T. Jensen","raw_affiliation_strings":["Department of Statistics, The Wharton School,","Department of Statistics, The Wharton School, University of Pennsylvania, Philadelphia, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, The Wharton School,","institution_ids":["https://openalex.org/I4210157222"]},{"raw_affiliation_string":"Department of Statistics, The Wharton School, University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5011962029","display_name":"Sridhar Hannenhalli","orcid":"https://orcid.org/0000-0001-9603-7569"},"institutions":[{"id":"https://openalex.org/I79576946","display_name":"University of Pennsylvania","ror":"https://ror.org/00b30xv10","country_code":"US","type":"education","lineage":["https://openalex.org/I79576946"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sridhar Hannenhalli","raw_affiliation_strings":["Penn Center for Bioinformatics and Department of Genetics, University of Pennsylvania, Philadelphia, PA 19104-6021,","Penn Center for Bioinformatics and Department of Genetics, University of Pennsylvania, Philadelphia, PA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Penn Center for Bioinformatics and Department of Genetics, University of Pennsylvania, Philadelphia, PA 19104-6021,","institution_ids":["https://openalex.org/I79576946"]},{"raw_affiliation_string":"Penn Center for Bioinformatics and Department of Genetics, University of Pennsylvania, Philadelphia, PA","institution_ids":["https://openalex.org/I79576946"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5038370606"],"corresponding_institution_ids":["https://openalex.org/I79576946"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.548,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.72064256,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"225","last_page":"234"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9968000054359436,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.7138586044311523},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.6168675422668457},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.6000153422355652},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.5584951043128967},{"id":"https://openalex.org/keywords/general-transcription-factor","display_name":"General transcription factor","score":0.49555695056915283},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4821628928184509},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4805346131324768},{"id":"https://openalex.org/keywords/response-element","display_name":"Response element","score":0.47622233629226685},{"id":"https://openalex.org/keywords/transcription","display_name":"Transcription (linguistics)","score":0.4434441328048706},{"id":"https://openalex.org/keywords/e-box","display_name":"E-box","score":0.4428960382938385},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4381641447544098},{"id":"https://openalex.org/keywords/cis-regulatory-module","display_name":"Cis-regulatory module","score":0.43608444929122925},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3805161416530609},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.28472185134887695},{"id":"https://openalex.org/keywords/enhancer","display_name":"Enhancer","score":0.23013025522232056}],"concepts":[{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.7138586044311523},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.6168675422668457},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.6000153422355652},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.5584951043128967},{"id":"https://openalex.org/C144825837","wikidata":"https://www.wikidata.org/wiki/Q2316030","display_name":"General transcription factor","level":5,"score":0.49555695056915283},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4821628928184509},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4805346131324768},{"id":"https://openalex.org/C132376346","wikidata":"https://www.wikidata.org/wiki/Q7315962","display_name":"Response element","level":5,"score":0.47622233629226685},{"id":"https://openalex.org/C179926584","wikidata":"https://www.wikidata.org/wiki/Q207714","display_name":"Transcription (linguistics)","level":2,"score":0.4434441328048706},{"id":"https://openalex.org/C76753757","wikidata":"https://www.wikidata.org/wiki/Q3825657","display_name":"E-box","level":5,"score":0.4428960382938385},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4381641447544098},{"id":"https://openalex.org/C190796033","wikidata":"https://www.wikidata.org/wiki/Q1093165","display_name":"Cis-regulatory module","level":5,"score":0.43608444929122925},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3805161416530609},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.28472185134887695},{"id":"https://openalex.org/C111936080","wikidata":"https://www.wikidata.org/wiki/Q913367","display_name":"Enhancer","level":4,"score":0.23013025522232056},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-48540-7_19","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-48540-7_19","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.99.2349","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.99.2349","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-stat.wharton.upenn.edu/~stjensen/papers/shanejensen.interact06.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W131975224","https://openalex.org/W1502038901","https://openalex.org/W1633265983","https://openalex.org/W1968631710","https://openalex.org/W1980303046","https://openalex.org/W1994640266","https://openalex.org/W2002705413","https://openalex.org/W2008491350","https://openalex.org/W2015859607","https://openalex.org/W2026436579","https://openalex.org/W2045104360","https://openalex.org/W2045123670","https://openalex.org/W2062872358","https://openalex.org/W2065855627","https://openalex.org/W2075879183","https://openalex.org/W2079321730","https://openalex.org/W2080498142","https://openalex.org/W2083630984","https://openalex.org/W2097832534","https://openalex.org/W2110065044","https://openalex.org/W2114066176","https://openalex.org/W2120935357","https://openalex.org/W2125508747","https://openalex.org/W2125904054","https://openalex.org/W2126602684","https://openalex.org/W2135215848","https://openalex.org/W2144710927","https://openalex.org/W2149769193","https://openalex.org/W2166103265","https://openalex.org/W2167269639","https://openalex.org/W2527946216"],"related_works":["https://openalex.org/W2899701265","https://openalex.org/W1977032243","https://openalex.org/W2110955240","https://openalex.org/W1513184763","https://openalex.org/W2187994625","https://openalex.org/W2038010573","https://openalex.org/W1706674169","https://openalex.org/W2352563618","https://openalex.org/W2125854412","https://openalex.org/W4224119696"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3}],"updated_date":"2026-05-03T08:25:01.440150","created_date":"2025-10-10T00:00:00"}
