{"id":"https://openalex.org/W1873594873","doi":"https://doi.org/10.1007/978-3-540-48540-7_11","title":"Improved Duplication Models for Proteome Network Evolution","display_name":"Improved Duplication Models for Proteome Network Evolution","publication_year":2007,"publication_date":"2007-05-15","ids":{"openalex":"https://openalex.org/W1873594873","doi":"https://doi.org/10.1007/978-3-540-48540-7_11","mag":"1873594873"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-48540-7_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-48540-7_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://durham-repository.worktribe.com/output/1639609","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008925587","display_name":"G\u00fcrkan Bebek","orcid":"https://orcid.org/0000-0003-3081-3371"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"G\u00fcrkan Bebek","raw_affiliation_strings":["Department of EECS, Case Western Reserve University, Cleveland, OH 44106-7071, USA","Department of EECS, Case Western Reserve University, Cleveland, OH"],"affiliations":[{"raw_affiliation_string":"Department of EECS, Case Western Reserve University, Cleveland, OH 44106-7071, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Department of EECS, Case Western Reserve University, Cleveland, OH","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072910141","display_name":"Petra Berenbrink","orcid":"https://orcid.org/0000-0002-6930-3259"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Petra Berenbrink","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby BC, V5A 1S6, Canada","School of Computing Science, Simon Fraser University, Burnaby BC, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby BC, Canada#TAB#","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022238950","display_name":"Colin Cooper","orcid":"https://orcid.org/0000-0002-5264-4401"},"institutions":[{"id":"https://openalex.org/I183935753","display_name":"King's College London","ror":"https://ror.org/0220mzb33","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I183935753"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Colin Cooper","raw_affiliation_strings":["Department of Computer Science, King\u2019s College, London WC2R 2LS, UK","Department of Computer Science, King\u2019s College London, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, King\u2019s College, London WC2R 2LS, UK","institution_ids":["https://openalex.org/I183935753"]},{"raw_affiliation_string":"Department of Computer Science, King\u2019s College London, UK","institution_ids":["https://openalex.org/I183935753"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011308108","display_name":"Tom Friedetzky","orcid":"https://orcid.org/0000-0002-1299-5514"},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tom Friedetzky","raw_affiliation_strings":["Department of Computer Science, Durham University, Durham, DH1 3LE, UK","Department of Computer Science, Durham University, Durham, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Durham University, Durham, DH1 3LE, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"Department of Computer Science, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091606904","display_name":"Joseph H. Nadeau","orcid":"https://orcid.org/0000-0002-9570-7361"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph H. Nadeau","raw_affiliation_strings":["Genetics Department, Case Western Reserve University, Cleveland, OH 44106-4955, USA","Genetics Department, Case Western Reserve University, Cleveland#TAB#"],"affiliations":[{"raw_affiliation_string":"Genetics Department, Case Western Reserve University, Cleveland, OH 44106-4955, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Genetics Department, Case Western Reserve University, Cleveland#TAB#","institution_ids":["https://openalex.org/I58956616"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042282214","display_name":"S. Cenk \u015eahinalp","orcid":"https://orcid.org/0000-0002-5050-0682"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"S. Cenk Sahinalp","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby BC, V5A 1S6, Canada","School of Computing Science, Simon Fraser University, Burnaby BC, Canada#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby BC, V5A 1S6, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby BC, Canada#TAB#","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008925587"],"corresponding_institution_ids":["https://openalex.org/I58956616"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.7402,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.90418493,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"119","last_page":"137"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/degree-distribution","display_name":"Degree distribution","score":0.8232109546661377},{"id":"https://openalex.org/keywords/preferential-attachment","display_name":"Preferential attachment","score":0.5170189142227173},{"id":"https://openalex.org/keywords/degree","display_name":"Degree (music)","score":0.5164994597434998},{"id":"https://openalex.org/keywords/random-graph","display_name":"Random graph","score":0.511587917804718},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4373428225517273},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.429644376039505},{"id":"https://openalex.org/keywords/power-law","display_name":"Power law","score":0.42222917079925537},{"id":"https://openalex.org/keywords/scale-free-network","display_name":"Scale-free network","score":0.42201536893844604},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.367931604385376},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.35088175535202026},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3386997580528259},{"id":"https://openalex.org/keywords/complex-network","display_name":"Complex network","score":0.30120986700057983},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.20526397228240967},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.1461504101753235},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09023308753967285}],"concepts":[{"id":"https://openalex.org/C87414783","wikidata":"https://www.wikidata.org/wiki/Q1002603","display_name":"Degree distribution","level":3,"score":0.8232109546661377},{"id":"https://openalex.org/C2780600066","wikidata":"https://www.wikidata.org/wiki/Q7239828","display_name":"Preferential attachment","level":3,"score":0.5170189142227173},{"id":"https://openalex.org/C2775997480","wikidata":"https://www.wikidata.org/wiki/Q586277","display_name":"Degree (music)","level":2,"score":0.5164994597434998},{"id":"https://openalex.org/C47458327","wikidata":"https://www.wikidata.org/wiki/Q910404","display_name":"Random graph","level":3,"score":0.511587917804718},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4373428225517273},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.429644376039505},{"id":"https://openalex.org/C87040749","wikidata":"https://www.wikidata.org/wiki/Q428971","display_name":"Power law","level":2,"score":0.42222917079925537},{"id":"https://openalex.org/C25580894","wikidata":"https://www.wikidata.org/wiki/Q1071058","display_name":"Scale-free network","level":3,"score":0.42201536893844604},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.367931604385376},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.35088175535202026},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3386997580528259},{"id":"https://openalex.org/C34947359","wikidata":"https://www.wikidata.org/wiki/Q665189","display_name":"Complex network","level":2,"score":0.30120986700057983},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.20526397228240967},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.1461504101753235},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09023308753967285},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-540-48540-7_11","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-48540-7_11","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.60.6522","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.60.6522","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://compbio.cs.sfu.ca/publications/protein3-1.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.68.869","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.68.869","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://compbio.cs.sfu.ca/publications/40230119.pdf","raw_type":"text"},{"id":"pmh:oai:durham-repository.worktribe.com:1639609","is_oa":true,"landing_page_url":"https://durham-repository.worktribe.com/output/1639609","pdf_url":null,"source":{"id":"https://openalex.org/S4306400188","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Book Chapter"}],"best_oa_location":{"id":"pmh:oai:durham-repository.worktribe.com:1639609","is_oa":true,"landing_page_url":"https://durham-repository.worktribe.com/output/1639609","pdf_url":null,"source":{"id":"https://openalex.org/S4306400188","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Book Chapter"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1534714850","https://openalex.org/W1589421353","https://openalex.org/W1591378753","https://openalex.org/W1604959358","https://openalex.org/W1641544182","https://openalex.org/W1763075905","https://openalex.org/W1976969221","https://openalex.org/W1980041175","https://openalex.org/W1984137208","https://openalex.org/W2008620264","https://openalex.org/W2036671379","https://openalex.org/W2037433020","https://openalex.org/W2048324994","https://openalex.org/W2050715692","https://openalex.org/W2056380633","https://openalex.org/W2061507735","https://openalex.org/W2062021443","https://openalex.org/W2063639254","https://openalex.org/W2065304353","https://openalex.org/W2067247412","https://openalex.org/W2084668512","https://openalex.org/W2088048878","https://openalex.org/W2097147952","https://openalex.org/W2112090702","https://openalex.org/W2112609377","https://openalex.org/W2115579680","https://openalex.org/W2129620481","https://openalex.org/W2130790725","https://openalex.org/W2132582966","https://openalex.org/W2135123683","https://openalex.org/W2140827816","https://openalex.org/W2148762636","https://openalex.org/W2152075687","https://openalex.org/W2167680767","https://openalex.org/W2167869241","https://openalex.org/W2169526870","https://openalex.org/W2170840812","https://openalex.org/W2172049947","https://openalex.org/W4229487902","https://openalex.org/W4312512934"],"related_works":["https://openalex.org/W2922108232","https://openalex.org/W2341322822","https://openalex.org/W1981257001","https://openalex.org/W1945989287","https://openalex.org/W2042042148","https://openalex.org/W2976337371","https://openalex.org/W3158371081","https://openalex.org/W4288103010","https://openalex.org/W2088554646","https://openalex.org/W2944759572"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}