{"id":"https://openalex.org/W2099170092","doi":"https://doi.org/10.1007/978-3-540-32251-1_8","title":"Genome-Wide Functional Annotation Environment for Thermus thermophilus in OBIGrid","display_name":"Genome-Wide Functional Annotation Environment for Thermus thermophilus in OBIGrid","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2099170092","doi":"https://doi.org/10.1007/978-3-540-32251-1_8","mag":"2099170092"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-32251-1_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-32251-1_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007141766","display_name":"Akinobu Fukuzaki","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akinobu Fukuzaki","raw_affiliation_strings":["Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065280788","display_name":"Takeshi Nagashima","orcid":"https://orcid.org/0000-0002-7261-9908"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Takeshi Nagashima","raw_affiliation_strings":["Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016164521","display_name":"Kaori Ide","orcid":"https://orcid.org/0000-0001-6915-6562"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kaori Ide","raw_affiliation_strings":["Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082988354","display_name":"Fumikazu Konishi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Fumikazu Konishi","raw_affiliation_strings":["Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110269466","display_name":"Mariko Hatakeyama","orcid":null},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Mariko Hatakeyama","raw_affiliation_strings":["Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#","institution_ids":["https://openalex.org/I4210150921"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027781657","display_name":"Shigeyuki Yokoyama","orcid":"https://orcid.org/0000-0003-3133-7338"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I74801974","display_name":"The University of Tokyo","ror":"https://ror.org/057zh3y96","country_code":"JP","type":"education","lineage":["https://openalex.org/I74801974"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shigeyuki Yokoyama","raw_affiliation_strings":["Grad. Sch. of Sci., Univ. of Tokyo., 7-3-1, Hongoh, Bunkyou-ku, Tokyo, Japan","Protein Res. G., RIKEN GSC, 1-7-22, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan","RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","RIKEN Harima Inst., Hyogo, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grad. Sch. of Sci., Univ. of Tokyo., 7-3-1, Hongoh, Bunkyou-ku, Tokyo, Japan","institution_ids":["https://openalex.org/I74801974"]},{"raw_affiliation_string":"Protein Res. G., RIKEN GSC, 1-7-22, Suehiro, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":["https://openalex.org/I4210150921"]},{"raw_affiliation_string":"RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Harima Inst., Hyogo, Japan#TAB#","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025116997","display_name":"Seiki Kuramitsu","orcid":"https://orcid.org/0000-0003-4364-1994"},"institutions":[{"id":"https://openalex.org/I4210106555","display_name":"Toneyama National Hospital","ror":"https://ror.org/01ppsp263","country_code":"JP","type":"healthcare","lineage":["https://openalex.org/I4210106555","https://openalex.org/I4210137409"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Seiki Kuramitsu","raw_affiliation_strings":["Grad. Sch. of Sci., Osaka Univ., 1-3, Machikaneyama-cho, Toyonaka, Osaka, Japan","RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","RIKEN Harima Inst., Hyogo, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Grad. Sch. of Sci., Osaka Univ., 1-3, Machikaneyama-cho, Toyonaka, Osaka, Japan","institution_ids":["https://openalex.org/I4210106555"]},{"raw_affiliation_string":"RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Harima Inst., Hyogo, Japan#TAB#","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080907178","display_name":"Akihiko Konagaya","orcid":"https://orcid.org/0000-0001-6846-7449"},"institutions":[{"id":"https://openalex.org/I4210150921","display_name":"RIKEN Center for Integrative Medical Sciences","ror":"https://ror.org/04mb6s476","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210150921"]},{"id":"https://openalex.org/I4210151238","display_name":"Center for Genomic Science","ror":"https://ror.org/04xbkmk86","country_code":"IT","type":"facility","lineage":["https://openalex.org/I30771326","https://openalex.org/I4210151238"]}],"countries":["IT","JP"],"is_corresponding":false,"raw_author_name":"Akihiko Konagaya","raw_affiliation_strings":["Advanced Genome Information Technology Research Group, Bioknowledge Federation Research Team, RIKEN Genomic Science Center (GSC),","Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Genome Information Technology Research Group, Bioknowledge Federation Research Team, RIKEN Genomic Science Center (GSC),","institution_ids":["https://openalex.org/I4210151238"]},{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, 1-7-22, Suehiro-cho, Tsurumi, Yokohama, Kanagawa, Japan","institution_ids":[]},{"raw_affiliation_string":"RIKEN Harima Inst., 1-1-1, Kouto, Mikazuki-cho, Sayo-gun, Hyogo, Japan","institution_ids":[]},{"raw_affiliation_string":"Bioinformatics G., RIKEN GSC, Yokohama, Kanagawa, Japan#TAB#","institution_ids":["https://openalex.org/I4210150921"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"82","last_page":"91"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/thermus-thermophilus","display_name":"Thermus thermophilus","score":0.9401291012763977},{"id":"https://openalex.org/keywords/orfs","display_name":"ORFS","score":0.8793134689331055},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7764716744422913},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6068407297134399},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4629420042037964},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3718734681606293},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3380594253540039},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3277527689933777},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3215349316596985},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3143707513809204},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.25153401494026184},{"id":"https://openalex.org/keywords/open-reading-frame","display_name":"Open reading frame","score":0.21902969479560852},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.15116173028945923}],"concepts":[{"id":"https://openalex.org/C2780883830","wikidata":"https://www.wikidata.org/wiki/Q139470","display_name":"Thermus thermophilus","level":4,"score":0.9401291012763977},{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.8793134689331055},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7764716744422913},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6068407297134399},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4629420042037964},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3718734681606293},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3380594253540039},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3277527689933777},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3215349316596985},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3143707513809204},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.25153401494026184},{"id":"https://openalex.org/C47289529","wikidata":"https://www.wikidata.org/wiki/Q908550","display_name":"Open reading frame","level":4,"score":0.21902969479560852},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.15116173028945923},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-32251-1_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-32251-1_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:t2r2.star.titech.ac.jp:50378364","is_oa":false,"landing_page_url":"http://t2r2.star.titech.ac.jp/cgi-bin/publicationinfo.cgi?q_publication_content_number=CTT100747582","pdf_url":null,"source":{"id":"https://openalex.org/S4377196385","display_name":"Tokyo Tech Research Repository (Tokyo Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114531698","host_organization_name":"Tokyo Institute of Technology","host_organization_lineage":["https://openalex.org/I114531698"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1568513966","https://openalex.org/W1898210414","https://openalex.org/W1973932849","https://openalex.org/W2004072996","https://openalex.org/W2022366078","https://openalex.org/W2055043387","https://openalex.org/W2110182011","https://openalex.org/W2114083522","https://openalex.org/W2117919289","https://openalex.org/W2131581981","https://openalex.org/W2153294290","https://openalex.org/W2159482845","https://openalex.org/W2159628188"],"related_works":["https://openalex.org/W2039410154","https://openalex.org/W2051856433","https://openalex.org/W2057537504","https://openalex.org/W2140948740","https://openalex.org/W1976390578","https://openalex.org/W2016512209","https://openalex.org/W2552089663","https://openalex.org/W2037527629","https://openalex.org/W2070116684","https://openalex.org/W3157775633"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}
