{"id":"https://openalex.org/W2150525717","doi":"https://doi.org/10.1007/978-3-540-32251-1_3","title":"Distributed Cell Biology Simulations with E-Cell System","display_name":"Distributed Cell Biology Simulations with E-Cell System","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2150525717","doi":"https://doi.org/10.1007/978-3-540-32251-1_3","mag":"2150525717"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-32251-1_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-32251-1_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071767668","display_name":"Masahiro Sugimoto","orcid":"https://orcid.org/0000-0003-3316-2543"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]},{"id":"https://openalex.org/I4210150161","display_name":"Mitsubishi Space Software (Japan)","ror":"https://ror.org/04t23sv93","country_code":"JP","type":"company","lineage":["https://openalex.org/I4210150161"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masahiro Sugimoto","raw_affiliation_strings":["Bioinformatics Department, Mitsubishi Space Software Co. Ltd., Amagasaki, Hyogo, 661-0001, Japan","Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0035, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Department, Mitsubishi Space Software Co. Ltd., Amagasaki, Hyogo, 661-0001, Japan","institution_ids":["https://openalex.org/I4210150161"]},{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0035, Japan","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112074183","display_name":"Kouichi Takahashi","orcid":null},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Kouichi Takahashi","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0035, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0035, Japan","institution_ids":["https://openalex.org/I203951103"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019710485","display_name":"Tomoya Kitayama","orcid":null},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tomoya Kitayama","raw_affiliation_strings":["Laboratory for Bioinformatics, Keio University Fujisawa, 252-8520, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Bioinformatics, Keio University Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103284951","display_name":"Daiki Ito","orcid":null},"institutions":[{"id":"https://openalex.org/I4210141715","display_name":"Keio University Shonan Fujisawa","ror":"https://ror.org/047khpn70","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210141715"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Daiki Ito","raw_affiliation_strings":["Laboratory for Bioinformatics, Keio University Fujisawa, 252-8520, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory for Bioinformatics, Keio University Fujisawa, 252-8520, Japan","institution_ids":["https://openalex.org/I4210141715"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5015575713","display_name":"Masaru Tomita","orcid":"https://orcid.org/0000-0003-3423-377X"},"institutions":[{"id":"https://openalex.org/I203951103","display_name":"Keio University","ror":"https://ror.org/02kn6nx58","country_code":"JP","type":"education","lineage":["https://openalex.org/I203951103"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Masaru Tomita","raw_affiliation_strings":["Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0035, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Advanced Biosciences, Keio University, Tsuruoka, Yamagata, 997-0035, Japan","institution_ids":["https://openalex.org/I203951103"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"20","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.831504225730896},{"id":"https://openalex.org/keywords/workstation","display_name":"Workstation","score":0.7210665941238403},{"id":"https://openalex.org/keywords/scripting-language","display_name":"Scripting language","score":0.5930240750312805},{"id":"https://openalex.org/keywords/multiprocessing","display_name":"Multiprocessing","score":0.5735137462615967},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5723091959953308},{"id":"https://openalex.org/keywords/computational-resource","display_name":"Computational resource","score":0.5336537957191467},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.527214765548706},{"id":"https://openalex.org/keywords/server","display_name":"Server","score":0.5014088153839111},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4696934223175049},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.460128515958786},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.41590583324432373},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3278389573097229},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2422989308834076},{"id":"https://openalex.org/keywords/computational-complexity-theory","display_name":"Computational complexity theory","score":0.1954246163368225},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12776297330856323},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1163448691368103}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.831504225730896},{"id":"https://openalex.org/C67953723","wikidata":"https://www.wikidata.org/wiki/Q192525","display_name":"Workstation","level":2,"score":0.7210665941238403},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5930240750312805},{"id":"https://openalex.org/C4822641","wikidata":"https://www.wikidata.org/wiki/Q846651","display_name":"Multiprocessing","level":2,"score":0.5735137462615967},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5723091959953308},{"id":"https://openalex.org/C127964446","wikidata":"https://www.wikidata.org/wiki/Q1092142","display_name":"Computational resource","level":3,"score":0.5336537957191467},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.527214765548706},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.5014088153839111},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4696934223175049},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.460128515958786},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.41590583324432373},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3278389573097229},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2422989308834076},{"id":"https://openalex.org/C179799912","wikidata":"https://www.wikidata.org/wiki/Q205084","display_name":"Computational complexity theory","level":2,"score":0.1954246163368225},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12776297330856323},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1163448691368103},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-540-32251-1_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-32251-1_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.100.8750","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.100.8750","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.e-cell.org/ecell/papers/sugimoto2005.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.47999998927116394,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1495660511","https://openalex.org/W1498947724","https://openalex.org/W1505671173","https://openalex.org/W1515184264","https://openalex.org/W1569031835","https://openalex.org/W1576818901","https://openalex.org/W1576919957","https://openalex.org/W1660769996","https://openalex.org/W1672635264","https://openalex.org/W1989818965","https://openalex.org/W2107523227","https://openalex.org/W2108896820","https://openalex.org/W2111259717","https://openalex.org/W2111420033","https://openalex.org/W2111996486","https://openalex.org/W2130524976","https://openalex.org/W2131067724","https://openalex.org/W2134941378","https://openalex.org/W2134954564","https://openalex.org/W2139038899","https://openalex.org/W2141239733","https://openalex.org/W2155518645","https://openalex.org/W2160206342","https://openalex.org/W2170996473"],"related_works":["https://openalex.org/W2045348955","https://openalex.org/W2352028719","https://openalex.org/W2584886384","https://openalex.org/W2378667902","https://openalex.org/W2052769075","https://openalex.org/W2791088446","https://openalex.org/W4206808270","https://openalex.org/W2166936983","https://openalex.org/W1999130367","https://openalex.org/W1639568318"],"abstract_inverted_index":null,"counts_by_year":[{"year":2013,"cited_by_count":2}],"updated_date":"2026-07-15T18:14:33.161393","created_date":"2025-10-10T00:00:00"}