{"id":"https://openalex.org/W1525763385","doi":"https://doi.org/10.1007/978-3-540-30551-4_50","title":"Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs","display_name":"Local Gapped Subforest Alignment and Its Application in Finding RNA Structural Motifs","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W1525763385","doi":"https://doi.org/10.1007/978-3-540-30551-4_50","mag":"1525763385"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-30551-4_50","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-30551-4_50","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060626918","display_name":"Jesper Jansson","orcid":"https://orcid.org/0000-0001-6859-8932"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jesper Jansson","raw_affiliation_strings":["School of Computing, National University of Singapore, 3\u00a0Science Drive\u00a02, 117543, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, 3\u00a0Science Drive\u00a02, 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075041286","display_name":"Hieu T. Ngo","orcid":"https://orcid.org/0000-0001-6687-4817"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Ngo Trung Hieu","raw_affiliation_strings":["School of Computing, National University of Singapore, 3\u00a0Science Drive\u00a02, 117543, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, 3\u00a0Science Drive\u00a02, 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5012563463","display_name":"Wing\u2010Kin Sung","orcid":"https://orcid.org/0000-0001-7806-7086"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wing-Kin Sung","raw_affiliation_strings":["School of Computing, National University of Singapore, 3\u00a0Science Drive\u00a02, 117543, Singapore"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, National University of Singapore, 3\u00a0Science Drive\u00a02, 117543, Singapore","institution_ids":["https://openalex.org/I165932596"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.455,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.8281515,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"569","last_page":"580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.6290647983551025},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.5265743136405945},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.5035383105278015},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.4785248041152954},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.46903738379478455},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4474600553512573},{"id":"https://openalex.org/keywords/local-structure","display_name":"Local structure","score":0.4153841733932495},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.34530532360076904},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.29027795791625977},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.2884690761566162},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.20034661889076233},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.15577930212020874}],"concepts":[{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.6290647983551025},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.5265743136405945},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.5035383105278015},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.4785248041152954},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.46903738379478455},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4474600553512573},{"id":"https://openalex.org/C2986090443","wikidata":"https://www.wikidata.org/wiki/Q77870413","display_name":"Local structure","level":2,"score":0.4153841733932495},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.34530532360076904},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.29027795791625977},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.2884690761566162},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.20034661889076233},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.15577930212020874},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C159467904","wikidata":"https://www.wikidata.org/wiki/Q2001702","display_name":"Chemical physics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-540-30551-4_50","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-30551-4_50","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:scholarbank.nus.edu.sg:10635/39448","is_oa":false,"landing_page_url":"http://scholarbank.nus.edu.sg/handle/10635/39448","pdf_url":null,"source":{"id":"https://openalex.org/S7407052290","display_name":"National University of Singapore","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Scopus","raw_type":"Article"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.102.4336","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.102.4336","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.df.lth.se/~jj/Publications/lgsf5_JCB2006.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.110.8366","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.110.8366","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.comp.nus.edu.sg/~bioinfo/LGSFAligner/lgsf5.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.7099999785423279,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":32,"referenced_works":["https://openalex.org/W1511188453","https://openalex.org/W1513047926","https://openalex.org/W1570126464","https://openalex.org/W1600401233","https://openalex.org/W1718544036","https://openalex.org/W1883119480","https://openalex.org/W1975009259","https://openalex.org/W1976373002","https://openalex.org/W1983869386","https://openalex.org/W2001583934","https://openalex.org/W2008288996","https://openalex.org/W2011975945","https://openalex.org/W2018076990","https://openalex.org/W2018414460","https://openalex.org/W2024797550","https://openalex.org/W2049461910","https://openalex.org/W2053197884","https://openalex.org/W2067194564","https://openalex.org/W2079307253","https://openalex.org/W2088528526","https://openalex.org/W2093198875","https://openalex.org/W2102225325","https://openalex.org/W2116509046","https://openalex.org/W2134861301","https://openalex.org/W2136740638","https://openalex.org/W2143754824","https://openalex.org/W2147828873","https://openalex.org/W2154846630","https://openalex.org/W2157481857","https://openalex.org/W2157532207","https://openalex.org/W2561675875","https://openalex.org/W2610552050"],"related_works":["https://openalex.org/W2112295995","https://openalex.org/W2440351739","https://openalex.org/W2578633072","https://openalex.org/W2030217883","https://openalex.org/W1519235666","https://openalex.org/W3013174434","https://openalex.org/W2801747814","https://openalex.org/W2106858946","https://openalex.org/W1776991207","https://openalex.org/W3042626414"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
