{"id":"https://openalex.org/W1501073662","doi":"https://doi.org/10.1007/978-3-540-30219-3_1","title":"Reversing Gene Erosion \u2013 Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data","display_name":"Reversing Gene Erosion \u2013 Reconstructing Ancestral Bacterial Genomes from Gene-Content and Order Data","publication_year":2004,"publication_date":"2004-01-01","ids":{"openalex":"https://openalex.org/W1501073662","doi":"https://doi.org/10.1007/978-3-540-30219-3_1","mag":"1501073662"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-30219-3_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-30219-3_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://infoscience.epfl.ch/record/165153","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042882970","display_name":"Joel V. Earnest-DeYoung","orcid":null},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Joel V. Earnest-DeYoung","raw_affiliation_strings":["Dept. of Computer Science, Univ. of New Mexico, Albuquerque, NM, 87131, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Univ. of New Mexico, Albuquerque, NM, 87131, USA","institution_ids":["https://openalex.org/I169521973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042069745","display_name":"Emmanuelle Lerat","orcid":"https://orcid.org/0000-0001-6757-8796"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emmanuelle Lerat","raw_affiliation_strings":["Dept. of Ecology and Evolutionary Biology, Univ. of Arizona, Tucson, AZ, 85721, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Ecology and Evolutionary Biology, Univ. of Arizona, Tucson, AZ, 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059287546","display_name":"Bernard M. E. Moret","orcid":"https://orcid.org/0000-0003-1549-4544"},"institutions":[{"id":"https://openalex.org/I169521973","display_name":"University of New Mexico","ror":"https://ror.org/05fs6jp91","country_code":"US","type":"education","lineage":["https://openalex.org/I169521973"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bernard M. E. Moret","raw_affiliation_strings":["Dept. of Computer Science, Univ. of New Mexico, Albuquerque, NM, 87131, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science, Univ. of New Mexico, Albuquerque, NM, 87131, USA","institution_ids":["https://openalex.org/I169521973"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042882970"],"corresponding_institution_ids":["https://openalex.org/I169521973"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":8.2243,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.97802977,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"1","last_page":"13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.9951000213623047,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7946325540542603},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.6775934100151062},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"Gene duplication","score":0.5539695620536804},{"id":"https://openalex.org/keywords/enhanced-data-rates-for-gsm-evolution","display_name":"Enhanced Data Rates for GSM Evolution","score":0.5445057153701782},{"id":"https://openalex.org/keywords/bacterial-genome-size","display_name":"Bacterial genome size","score":0.5096445083618164},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4917147755622864},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4675793945789337},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.44089168310165405},{"id":"https://openalex.org/keywords/order","display_name":"Order (exchange)","score":0.4142572581768036},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39951419830322266},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35064607858657837},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2477184534072876},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.21392691135406494},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1467512845993042},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.14391404390335083}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7946325540542603},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.6775934100151062},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.5539695620536804},{"id":"https://openalex.org/C162307627","wikidata":"https://www.wikidata.org/wiki/Q204833","display_name":"Enhanced Data Rates for GSM Evolution","level":2,"score":0.5445057153701782},{"id":"https://openalex.org/C3742359","wikidata":"https://www.wikidata.org/wiki/Q4839988","display_name":"Bacterial genome size","level":4,"score":0.5096445083618164},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4917147755622864},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4675793945789337},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.44089168310165405},{"id":"https://openalex.org/C182306322","wikidata":"https://www.wikidata.org/wiki/Q1779371","display_name":"Order (exchange)","level":2,"score":0.4142572581768036},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39951419830322266},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35064607858657837},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2477184534072876},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.21392691135406494},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1467512845993042},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.14391404390335083},{"id":"https://openalex.org/C10138342","wikidata":"https://www.wikidata.org/wiki/Q43015","display_name":"Finance","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-540-30219-3_1","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-30219-3_1","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:infoscience.tind.io:165153","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/165153","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/165153","raw_type":"Text"},{"id":"pmh:oai:infoscience.tind.io:97881","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/97881","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/97881","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:infoscience.tind.io:165153","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/165153","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://infoscience.epfl.ch/record/165153","raw_type":"Text"},"sustainable_development_goals":[{"score":0.550000011920929,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":26,"referenced_works":["https://openalex.org/W1507091143","https://openalex.org/W1547622250","https://openalex.org/W1568869859","https://openalex.org/W1572531572","https://openalex.org/W1587567223","https://openalex.org/W1980890118","https://openalex.org/W1995117714","https://openalex.org/W2017500947","https://openalex.org/W2026452889","https://openalex.org/W2029943378","https://openalex.org/W2045240688","https://openalex.org/W2096466922","https://openalex.org/W2101067655","https://openalex.org/W2103849916","https://openalex.org/W2113824405","https://openalex.org/W2116697038","https://openalex.org/W2135146244","https://openalex.org/W2135504563","https://openalex.org/W2138222215","https://openalex.org/W2148699297","https://openalex.org/W2149353640","https://openalex.org/W2151464048","https://openalex.org/W2157312689","https://openalex.org/W2176286246","https://openalex.org/W2585130289","https://openalex.org/W4213429344"],"related_works":["https://openalex.org/W4388014327","https://openalex.org/W2280422768","https://openalex.org/W3143197806","https://openalex.org/W2115382138","https://openalex.org/W4252555497","https://openalex.org/W1883409887","https://openalex.org/W2367076742","https://openalex.org/W3121175838","https://openalex.org/W3016293053","https://openalex.org/W2349742942"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}