{"id":"https://openalex.org/W2097920274","doi":"https://doi.org/10.1007/978-3-540-25974-9_20","title":"Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems","display_name":"Combining State-Based and Scenario-Based Approaches in Modeling Biological Systems","publication_year":2005,"publication_date":"2005-01-01","ids":{"openalex":"https://openalex.org/W2097920274","doi":"https://doi.org/10.1007/978-3-540-25974-9_20","mag":"2097920274"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-540-25974-9_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-25974-9_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066189305","display_name":"Jasmin Fisher","orcid":"https://orcid.org/0000-0003-4477-9047"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":true,"raw_author_name":"Jasmin Fisher","raw_affiliation_strings":["Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088778612","display_name":"David Harel","orcid":"https://orcid.org/0000-0001-7240-3931"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"David Harel","raw_affiliation_strings":["Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013477128","display_name":"E. Jane Albert Hubbard","orcid":"https://orcid.org/0000-0001-5893-7232"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"E. Jane Albert Hubbard","raw_affiliation_strings":["Dept. of Biology, New York University, New York, NY, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Biology, New York University, New York, NY, USA","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045161607","display_name":"Nir Piterman","orcid":"https://orcid.org/0000-0002-8242-5357"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Nir Piterman","raw_affiliation_strings":["Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042356923","display_name":"Michael Stern","orcid":"https://orcid.org/0000-0002-3907-9639"},"institutions":[{"id":"https://openalex.org/I32971472","display_name":"Yale University","ror":"https://ror.org/03v76x132","country_code":"US","type":"education","lineage":["https://openalex.org/I32971472"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael J. Stern","raw_affiliation_strings":["Dept. of Genetics, Yale School of Medicine, New Haven, CT, USA"],"affiliations":[{"raw_affiliation_string":"Dept. of Genetics, Yale School of Medicine, New Haven, CT, USA","institution_ids":["https://openalex.org/I32971472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034278546","display_name":"Naamah Swerdlin","orcid":null},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Naamah Swerdlin","raw_affiliation_strings":["Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science and App. Math., Weizmann Institute, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5066189305"],"corresponding_institution_ids":["https://openalex.org/I53964585"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":7.9151,"has_fulltext":false,"cited_by_count":28,"citation_normalized_percentile":{"value":0.97130134,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"236","last_page":"241"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10142","display_name":"Formal Methods in Verification","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.989300012588501,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8201338648796082},{"id":"https://openalex.org/keywords/formalism","display_name":"Formalism (music)","score":0.6307570934295654},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.48207026720046997},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.46049124002456665},{"id":"https://openalex.org/keywords/reverse-engineering","display_name":"Reverse engineering","score":0.43136101961135864},{"id":"https://openalex.org/keywords/complex-system","display_name":"Complex system","score":0.42524415254592896},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41147756576538086},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3540875017642975},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.3432600498199463},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.32277363538742065},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.2660403847694397},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0860341489315033}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8201338648796082},{"id":"https://openalex.org/C73301696","wikidata":"https://www.wikidata.org/wiki/Q5469984","display_name":"Formalism (music)","level":3,"score":0.6307570934295654},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.48207026720046997},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.46049124002456665},{"id":"https://openalex.org/C207850805","wikidata":"https://www.wikidata.org/wiki/Q269608","display_name":"Reverse engineering","level":2,"score":0.43136101961135864},{"id":"https://openalex.org/C47822265","wikidata":"https://www.wikidata.org/wiki/Q854457","display_name":"Complex system","level":2,"score":0.42524415254592896},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41147756576538086},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3540875017642975},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.3432600498199463},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.32277363538742065},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2660403847694397},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0860341489315033},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0},{"id":"https://openalex.org/C558565934","wikidata":"https://www.wikidata.org/wiki/Q2743","display_name":"Musical","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-540-25974-9_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-540-25974-9_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.299.1364","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.299.1364","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.wisdom.weizmann.ac.il/~dharel/papers/CMSB04.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.58.3170","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.58.3170","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.wisdom.weizmann.ac.il/~dharel/papers/CMSB04.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.99.5946","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.99.5946","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.doc.ic.ac.uk/~npiterma/publications/2004/FHHPSS04.pdf","raw_type":"text"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W290451387","https://openalex.org/W1482962177","https://openalex.org/W1517438818","https://openalex.org/W1581882798","https://openalex.org/W1592055490","https://openalex.org/W1944506262","https://openalex.org/W2002526701","https://openalex.org/W2018937303","https://openalex.org/W2098014705","https://openalex.org/W2099529102","https://openalex.org/W2105161851","https://openalex.org/W2121163444","https://openalex.org/W2481726056","https://openalex.org/W2913459036","https://openalex.org/W4210887861"],"related_works":["https://openalex.org/W2363831530","https://openalex.org/W2363845219","https://openalex.org/W2381057835","https://openalex.org/W1789649838","https://openalex.org/W1780668307","https://openalex.org/W1984362519","https://openalex.org/W2051831113","https://openalex.org/W2650054517","https://openalex.org/W2362738525","https://openalex.org/W1616281264"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
