{"id":"https://openalex.org/W2808920922","doi":"https://doi.org/10.1007/978-3-319-99429-1_9","title":"Stochastic Rate Parameter Inference Using the Cross-Entropy Method","display_name":"Stochastic Rate Parameter Inference Using the Cross-Entropy Method","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2808920922","doi":"https://doi.org/10.1007/978-3-319-99429-1_9","mag":"2808920922"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-99429-1_9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-99429-1_9","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-99429-1_9.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-99429-1_9.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022041079","display_name":"Jeremy Duncan Revell","orcid":null},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Jeremy Revell","raw_affiliation_strings":["School of Computing, Newcastle University, Newcastle upon Tyne, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing, Newcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054022139","display_name":"Paolo Zuliani","orcid":"https://orcid.org/0000-0001-6033-5919"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paolo Zuliani","raw_affiliation_strings":["School of Computing, Newcastle University, Newcastle upon Tyne, UK"],"affiliations":[{"raw_affiliation_string":"School of Computing, Newcastle University, Newcastle upon Tyne, UK","institution_ids":["https://openalex.org/I84884186"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5022041079"],"corresponding_institution_ids":["https://openalex.org/I84884186"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":0.7962,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.71172448,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"146","last_page":"164"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9858999848365784,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9769999980926514,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.812469482421875},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6336655616760254},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5451267957687378},{"id":"https://openalex.org/keywords/principle-of-maximum-entropy","display_name":"Principle of maximum entropy","score":0.4842495620250702},{"id":"https://openalex.org/keywords/entropy","display_name":"Entropy (arrow of time)","score":0.4644928276538849},{"id":"https://openalex.org/keywords/bistability","display_name":"Bistability","score":0.4463570713996887},{"id":"https://openalex.org/keywords/stochastic-approximation","display_name":"Stochastic approximation","score":0.4279181957244873},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37301671504974365},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27918800711631775}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.812469482421875},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6336655616760254},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5451267957687378},{"id":"https://openalex.org/C9679016","wikidata":"https://www.wikidata.org/wiki/Q1417473","display_name":"Principle of maximum entropy","level":2,"score":0.4842495620250702},{"id":"https://openalex.org/C106301342","wikidata":"https://www.wikidata.org/wiki/Q4117933","display_name":"Entropy (arrow of time)","level":2,"score":0.4644928276538849},{"id":"https://openalex.org/C97292510","wikidata":"https://www.wikidata.org/wiki/Q2304620","display_name":"Bistability","level":2,"score":0.4463570713996887},{"id":"https://openalex.org/C55479107","wikidata":"https://www.wikidata.org/wiki/Q97663916","display_name":"Stochastic approximation","level":3,"score":0.4279181957244873},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37301671504974365},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27918800711631775},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-99429-1_9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-99429-1_9","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-99429-1_9.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:eprint.ncl.ac.uk:249125","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402485","display_name":"Newcastle University ePrints (Newcastle Univesity)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I84884186","host_organization_name":"Newcastle University","host_organization_lineage":["https://openalex.org/I84884186"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:iris.uniroma1.it:11573/1681082","is_oa":false,"landing_page_url":"https://hdl.handle.net/11573/1681082","pdf_url":null,"source":{"id":"https://openalex.org/S4377196107","display_name":"IRIS Research product catalog (Sapienza University of Rome)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.1007/978-3-319-99429-1_9","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-99429-1_9","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-99429-1_9.pdf","source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4315833058","display_name":null,"funder_award_id":"DTP PhD studentship","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4475059929","display_name":"Synthetic Portabolomics: Leading the way at the crossroads of the Digital and the Bio Economies","funder_award_id":"EP/N031962/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8035887905","display_name":null,"funder_award_id":"EP/N031962/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8699219344","display_name":null,"funder_award_id":"N031962","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2808920922.pdf","grobid_xml":"https://content.openalex.org/works/W2808920922.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W1499965417","https://openalex.org/W1540505601","https://openalex.org/W1577352482","https://openalex.org/W1638774395","https://openalex.org/W1965555277","https://openalex.org/W1971886065","https://openalex.org/W1971914801","https://openalex.org/W1977771126","https://openalex.org/W1978319180","https://openalex.org/W1984217390","https://openalex.org/W1985658808","https://openalex.org/W1985937069","https://openalex.org/W1986206712","https://openalex.org/W2012100675","https://openalex.org/W2042321087","https://openalex.org/W2071747231","https://openalex.org/W2073148112","https://openalex.org/W2077046573","https://openalex.org/W2084924279","https://openalex.org/W2093470850","https://openalex.org/W2093625674","https://openalex.org/W2102653059","https://openalex.org/W2115734610","https://openalex.org/W2120196508","https://openalex.org/W2126678403","https://openalex.org/W2127660420","https://openalex.org/W2133068979","https://openalex.org/W2133615895","https://openalex.org/W2134759932","https://openalex.org/W2140484213","https://openalex.org/W2144269281","https://openalex.org/W2151729750","https://openalex.org/W2152246075","https://openalex.org/W2155418451","https://openalex.org/W2167543722","https://openalex.org/W2178323921","https://openalex.org/W2188928308","https://openalex.org/W2276269997","https://openalex.org/W2500539065","https://openalex.org/W2503839997","https://openalex.org/W2589760827","https://openalex.org/W2616017058","https://openalex.org/W2666630439","https://openalex.org/W3106349619","https://openalex.org/W4253187718","https://openalex.org/W4253926457","https://openalex.org/W4292691288"],"related_works":["https://openalex.org/W4224217224","https://openalex.org/W3118640947","https://openalex.org/W4388308731","https://openalex.org/W2042003698","https://openalex.org/W1964519618","https://openalex.org/W1969697984","https://openalex.org/W3048730783","https://openalex.org/W1992416820","https://openalex.org/W3041490575","https://openalex.org/W2970690932"],"abstract_inverted_index":{"We":[0,62],"present":[1],"a":[2,67],"new,":[3],"efficient":[4],"algorithm":[5,26,32,65],"for":[6,20],"inferring,":[7],"from":[8,59],"time-series":[9],"data":[10,13],"or":[11],"high-throughput":[12],"(e.g.,":[14],"flow":[15],"cytometry),":[16],"stochastic":[17,30],"rate":[18],"parameters":[19],"chemical":[21],"reaction":[22],"network":[23],"models.":[24],"Our":[25],"combines":[27],"the":[28,40],"Gillespie":[29],"simulation":[31],"(including":[33],"approximate":[34],"variants":[35],"such":[36],"as":[37],"tau-leaping)":[38],"with":[39,47,55],"cross-entropy":[41],"method.":[42],"Also,":[43],"it":[44],"can":[45],"work":[46],"incomplete":[48],"datasets":[49,57],"missing":[50],"some":[51],"model":[52],"species,":[53],"and":[54,77,80],"multiple":[56],"originating":[58],"experiment":[60],"repetitions.":[61],"evaluate":[63],"our":[64],"on":[66],"number":[68],"of":[69],"challenging":[70],"case":[71],"studies,":[72],"including":[73],"bistable":[74],"systems":[75],"(Schl\u00f6gl\u2019s":[76],"toggle":[78],"switch)":[79],"experimental":[81],"data.":[82]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
