{"id":"https://openalex.org/W2888500920","doi":"https://doi.org/10.1007/978-3-319-95921-4_32","title":"Image Analysis in Light Sheet Fluorescence Microscopy Images of Transgenic Zebrafish Vascular Development","display_name":"Image Analysis in Light Sheet Fluorescence Microscopy Images of Transgenic Zebrafish Vascular Development","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2888500920","doi":"https://doi.org/10.1007/978-3-319-95921-4_32","mag":"2888500920"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-95921-4_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-95921-4_32","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080766785","display_name":"Elisabeth Kugler","orcid":"https://orcid.org/0000-0003-2536-6140"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Elisabeth Kugler","raw_affiliation_strings":["Faculty of Medicine, Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, S10 2TN, UK","The Bateson Centre, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, UK"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, S10 2TN, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"The Bateson Centre, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061832907","display_name":"Tim Chico","orcid":"https://orcid.org/0000-0002-7458-5481"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Timothy Chico","raw_affiliation_strings":["Faculty of Medicine, Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, S10 2TN, UK","The Bateson Centre, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, UK"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, S10 2TN, UK","institution_ids":["https://openalex.org/I91136226"]},{"raw_affiliation_string":"The Bateson Centre, University of Sheffield, Firth Court, Western Bank, Sheffield, S10 2TN, UK","institution_ids":["https://openalex.org/I91136226"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001705802","display_name":"Paul Armitage","orcid":"https://orcid.org/0000-0003-2790-5478"},"institutions":[{"id":"https://openalex.org/I91136226","display_name":"University of Sheffield","ror":"https://ror.org/05krs5044","country_code":"GB","type":"education","lineage":["https://openalex.org/I91136226"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul Armitage","raw_affiliation_strings":["Faculty of Medicine, Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, S10 2TN, UK"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, Department of Infection, Immunity and Cardiovascular Disease, University of Sheffield, Sheffield, S10 2TN, UK","institution_ids":["https://openalex.org/I91136226"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5080766785"],"corresponding_institution_ids":["https://openalex.org/I91136226"],"apc_list":null,"apc_paid":null,"fwci":4.5389,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.94566099,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"343","last_page":"353"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10422","display_name":"Angiogenesis and VEGF in Cancer","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9437999725341797,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.897892951965332},{"id":"https://openalex.org/keywords/neurovascular-bundle","display_name":"Neurovascular bundle","score":0.7380350828170776},{"id":"https://openalex.org/keywords/fluorescence-microscope","display_name":"Fluorescence microscope","score":0.6068268418312073},{"id":"https://openalex.org/keywords/light-sheet-fluorescence-microscopy","display_name":"Light sheet fluorescence microscopy","score":0.5631813406944275},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5510804653167725},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5276057720184326},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.4922298491001129},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4800199568271637},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47135868668556213},{"id":"https://openalex.org/keywords/focus","display_name":"Focus (optics)","score":0.4472450315952301},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4197264611721039},{"id":"https://openalex.org/keywords/high-resolution","display_name":"High resolution","score":0.414066344499588},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.3813777267932892},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35970038175582886},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.34395092725753784},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.3009808659553528},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2845016419887543},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1890203356742859},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.13071304559707642},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.11551094055175781},{"id":"https://openalex.org/keywords/remote-sensing","display_name":"Remote sensing","score":0.115447998046875}],"concepts":[{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.897892951965332},{"id":"https://openalex.org/C105572291","wikidata":"https://www.wikidata.org/wiki/Q7002775","display_name":"Neurovascular bundle","level":2,"score":0.7380350828170776},{"id":"https://openalex.org/C169274487","wikidata":"https://www.wikidata.org/wiki/Q840211","display_name":"Fluorescence microscope","level":3,"score":0.6068268418312073},{"id":"https://openalex.org/C113976765","wikidata":"https://www.wikidata.org/wiki/Q1823502","display_name":"Light sheet fluorescence microscopy","level":4,"score":0.5631813406944275},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5510804653167725},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5276057720184326},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.4922298491001129},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4800199568271637},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47135868668556213},{"id":"https://openalex.org/C192209626","wikidata":"https://www.wikidata.org/wiki/Q190909","display_name":"Focus (optics)","level":2,"score":0.4472450315952301},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4197264611721039},{"id":"https://openalex.org/C3020199158","wikidata":"https://www.wikidata.org/wiki/Q210521","display_name":"High resolution","level":2,"score":0.414066344499588},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3813777267932892},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35970038175582886},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.34395092725753784},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.3009808659553528},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2845016419887543},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1890203356742859},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.13071304559707642},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.11551094055175781},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.115447998046875},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C187921700","wikidata":"https://www.wikidata.org/wiki/Q7430074","display_name":"Scanning confocal electron microscopy","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-95921-4_32","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-95921-4_32","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},{"id":"pmh:oai:eprints.whiterose.ac.uk:135960","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400854","display_name":"White Rose Research Online (University of Leeds, The University of Sheffield, University of York)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2800616092","host_organization_name":"White Rose University Consortium","host_organization_lineage":["https://openalex.org/I2800616092"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Proceedings Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4048582220","display_name":null,"funder_award_id":"EP/R00661X/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8185224989","display_name":null,"funder_award_id":"EP/P025021/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1627054999","https://openalex.org/W1970884399","https://openalex.org/W1975107026","https://openalex.org/W1988546517","https://openalex.org/W1990218886","https://openalex.org/W1995081439","https://openalex.org/W1999023281","https://openalex.org/W2002710196","https://openalex.org/W2008674896","https://openalex.org/W2024601523","https://openalex.org/W2026549488","https://openalex.org/W2030224529","https://openalex.org/W2036676940","https://openalex.org/W2040882982","https://openalex.org/W2045224542","https://openalex.org/W2050607897","https://openalex.org/W2055390961","https://openalex.org/W2071122929","https://openalex.org/W2090443608","https://openalex.org/W2091760375","https://openalex.org/W2096201131","https://openalex.org/W2103782445","https://openalex.org/W2124386111","https://openalex.org/W2125349610","https://openalex.org/W2127524603","https://openalex.org/W2133059825","https://openalex.org/W2138476437","https://openalex.org/W2143931888","https://openalex.org/W2144026946","https://openalex.org/W2150175529","https://openalex.org/W2151103935","https://openalex.org/W2152689442","https://openalex.org/W2164741953","https://openalex.org/W2167279371","https://openalex.org/W2171788130","https://openalex.org/W2250125968","https://openalex.org/W2414969905","https://openalex.org/W2417615065","https://openalex.org/W2598427385","https://openalex.org/W2611783013","https://openalex.org/W4230982142","https://openalex.org/W4299908858","https://openalex.org/W6603983777"],"related_works":["https://openalex.org/W2094643072","https://openalex.org/W3033454036","https://openalex.org/W4206210906","https://openalex.org/W2148310163","https://openalex.org/W4251922430","https://openalex.org/W2081886611","https://openalex.org/W3179188441","https://openalex.org/W4297897531","https://openalex.org/W3134327749","https://openalex.org/W29697196"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}