{"id":"https://openalex.org/W2881688145","doi":"https://doi.org/10.1007/978-3-319-94968-0_28","title":"Prediction of Type III Secreted Effectors Based on Word Embeddings for Protein Sequences","display_name":"Prediction of Type III Secreted Effectors Based on Word Embeddings for Protein Sequences","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2881688145","doi":"https://doi.org/10.1007/978-3-319-94968-0_28","mag":"2881688145"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-94968-0_28","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-94968-0_28","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101048670","display_name":"Xiaofeng Fu","orcid":null},"institutions":[{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]},{"id":"https://openalex.org/I4210165726","display_name":"Shanghai Municipal Education Commission","ror":"https://ror.org/05tewj457","country_code":"CN","type":"funder","lineage":["https://openalex.org/I4210165456","https://openalex.org/I4210165726"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiaofeng Fu","raw_affiliation_strings":["Department of Computer Science and Engineering, Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China","institution_ids":["https://openalex.org/I4210165726","https://openalex.org/I183067930"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023374419","display_name":"Yiqun Xiao","orcid":null},"institutions":[{"id":"https://openalex.org/I4210165726","display_name":"Shanghai Municipal Education Commission","ror":"https://ror.org/05tewj457","country_code":"CN","type":"funder","lineage":["https://openalex.org/I4210165456","https://openalex.org/I4210165726"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiqun Xiao","raw_affiliation_strings":["Department of Computer Science and Engineering, Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China","institution_ids":["https://openalex.org/I4210165726","https://openalex.org/I183067930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100397381","display_name":"Yang Yang","orcid":"https://orcid.org/0000-0001-5720-773X"},"institutions":[{"id":"https://openalex.org/I4210165726","display_name":"Shanghai Municipal Education Commission","ror":"https://ror.org/05tewj457","country_code":"CN","type":"funder","lineage":["https://openalex.org/I4210165456","https://openalex.org/I4210165726"]},{"id":"https://openalex.org/I183067930","display_name":"Shanghai Jiao Tong University","ror":"https://ror.org/0220qvk04","country_code":"CN","type":"education","lineage":["https://openalex.org/I183067930"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Yang","raw_affiliation_strings":["Department of Computer Science and Engineering, Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering, Shanghai Jiao Tong University, Shanghai, 200240, China","institution_ids":["https://openalex.org/I4210165726","https://openalex.org/I183067930"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101048670"],"corresponding_institution_ids":["https://openalex.org/I183067930","https://openalex.org/I4210165726"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.1945,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.78269937,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"287","last_page":"298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9944000244140625,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9936000108718872,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7295606136322021},{"id":"https://openalex.org/keywords/word2vec","display_name":"Word2vec","score":0.6142873167991638},{"id":"https://openalex.org/keywords/word-embedding","display_name":"Word embedding","score":0.5741203427314758},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.5455654263496399},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5267942547798157},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.48651689291000366},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.47014763951301575},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4644109904766083},{"id":"https://openalex.org/keywords/word","display_name":"Word (group theory)","score":0.455351859331131},{"id":"https://openalex.org/keywords/effector","display_name":"Effector","score":0.4244588017463684},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4203483760356903},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3959025740623474},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.33374619483947754},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2427803874015808},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.11787095665931702}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7295606136322021},{"id":"https://openalex.org/C2776461190","wikidata":"https://www.wikidata.org/wiki/Q22673982","display_name":"Word2vec","level":3,"score":0.6142873167991638},{"id":"https://openalex.org/C2777462759","wikidata":"https://www.wikidata.org/wiki/Q18395344","display_name":"Word embedding","level":3,"score":0.5741203427314758},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.5455654263496399},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5267942547798157},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.48651689291000366},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.47014763951301575},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4644109904766083},{"id":"https://openalex.org/C90805587","wikidata":"https://www.wikidata.org/wiki/Q10944557","display_name":"Word (group theory)","level":2,"score":0.455351859331131},{"id":"https://openalex.org/C51785407","wikidata":"https://www.wikidata.org/wiki/Q2627568","display_name":"Effector","level":2,"score":0.4244588017463684},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4203483760356903},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3959025740623474},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.33374619483947754},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2427803874015808},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.11787095665931702},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-94968-0_28","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-94968-0_28","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":35,"referenced_works":["https://openalex.org/W1494484168","https://openalex.org/W1498183065","https://openalex.org/W1501531009","https://openalex.org/W1614298861","https://openalex.org/W1965887320","https://openalex.org/W1972431062","https://openalex.org/W1991022130","https://openalex.org/W1994902865","https://openalex.org/W2005957699","https://openalex.org/W2006782375","https://openalex.org/W2018271515","https://openalex.org/W2018658696","https://openalex.org/W2021071631","https://openalex.org/W2025767948","https://openalex.org/W2026480276","https://openalex.org/W2050745211","https://openalex.org/W2059971420","https://openalex.org/W2075934337","https://openalex.org/W2102357455","https://openalex.org/W2117502874","https://openalex.org/W2119331235","https://openalex.org/W2124820296","https://openalex.org/W2126478370","https://openalex.org/W2132292391","https://openalex.org/W2144251138","https://openalex.org/W2144557646","https://openalex.org/W2145957695","https://openalex.org/W2148184404","https://openalex.org/W2152705149","https://openalex.org/W2155997698","https://openalex.org/W2156125289","https://openalex.org/W2159775055","https://openalex.org/W2170482677","https://openalex.org/W2950133940","https://openalex.org/W2952444689"],"related_works":["https://openalex.org/W2946409105","https://openalex.org/W2905749112","https://openalex.org/W3152932816","https://openalex.org/W2985392712","https://openalex.org/W4388996947","https://openalex.org/W3133567596","https://openalex.org/W3099354896","https://openalex.org/W4287599800","https://openalex.org/W3046869600","https://openalex.org/W2890749918"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
