{"id":"https://openalex.org/W2802362984","doi":"https://doi.org/10.1007/978-3-319-89929-9_15","title":"Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes","display_name":"Accurate Reconstruction of Microbial Strains from Metagenomic Sequencing Using Representative Reference Genomes","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2802362984","doi":"https://doi.org/10.1007/978-3-319-89929-9_15","mag":"2802362984"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-89929-9_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-89929-9_15","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091225885","display_name":"Zhemin Zhou","orcid":"https://orcid.org/0000-0001-9783-0366"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Zhemin Zhou","raw_affiliation_strings":["Warwick Medical School, University of Warwick, Coventry, UK"],"affiliations":[{"raw_affiliation_string":"Warwick Medical School, University of Warwick, Coventry, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030857363","display_name":"Nina Luhmann","orcid":"https://orcid.org/0000-0001-8112-7027"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nina Luhmann","raw_affiliation_strings":["Warwick Medical School, University of Warwick, Coventry, UK"],"affiliations":[{"raw_affiliation_string":"Warwick Medical School, University of Warwick, Coventry, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029831289","display_name":"Nabil-Fareed Alikhan","orcid":"https://orcid.org/0000-0002-1243-0767"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Nabil-Fareed Alikhan","raw_affiliation_strings":["Warwick Medical School, University of Warwick, Coventry, UK"],"affiliations":[{"raw_affiliation_string":"Warwick Medical School, University of Warwick, Coventry, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030580316","display_name":"Christopher Quince","orcid":"https://orcid.org/0000-0003-1884-8440"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christopher Quince","raw_affiliation_strings":["Warwick Medical School, University of Warwick, Coventry, UK"],"affiliations":[{"raw_affiliation_string":"Warwick Medical School, University of Warwick, Coventry, UK","institution_ids":["https://openalex.org/I39555362"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045135220","display_name":"Mark Achtman","orcid":"https://orcid.org/0000-0001-6815-0070"},"institutions":[{"id":"https://openalex.org/I39555362","display_name":"University of Warwick","ror":"https://ror.org/01a77tt86","country_code":"GB","type":"education","lineage":["https://openalex.org/I39555362"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Achtman","raw_affiliation_strings":["Warwick Medical School, University of Warwick, Coventry, UK"],"affiliations":[{"raw_affiliation_string":"Warwick Medical School, University of Warwick, Coventry, UK","institution_ids":["https://openalex.org/I39555362"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5091225885"],"corresponding_institution_ids":["https://openalex.org/I39555362"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.7776,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.95194393,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"225","last_page":"240"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9939000010490417,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"Metagenomics","score":0.9106271862983704},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.6891017556190491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.656093180179596},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5814797282218933},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5141497254371643},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.42812877893447876},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4264673888683319},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3454633951187134},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.29658862948417664},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10730308294296265},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.09209814667701721},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0804319977760315}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.9106271862983704},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.6891017556190491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.656093180179596},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5814797282218933},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5141497254371643},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.42812877893447876},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4264673888683319},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3454633951187134},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.29658862948417664},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10730308294296265},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.09209814667701721},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0804319977760315}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-89929-9_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-89929-9_15","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:wrap.warwick.ac.uk:101662","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400665","display_name":"Warwick Research Archive Portal (University of Warwick)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I39555362","host_organization_name":"University of Warwick","host_organization_lineage":["https://openalex.org/I39555362"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Conference Item"},{"id":"pmh:oai:ueaeprints.uea.ac.uk:87988","is_oa":false,"landing_page_url":"https://ueaeprints.uea.ac.uk/id/eprint/87988/","pdf_url":null,"source":{"id":"https://openalex.org/S4306400384","display_name":"UEA Digital Repository (University of East Anglia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1118541","host_organization_name":"University of East Anglia","host_organization_lineage":["https://openalex.org/I1118541"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6800000071525574,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W1703384511","https://openalex.org/W2009101619","https://openalex.org/W2034285706","https://openalex.org/W2055043387","https://openalex.org/W2100561213","https://openalex.org/W2113055661","https://openalex.org/W2114418658","https://openalex.org/W2134375163","https://openalex.org/W2143280034","https://openalex.org/W2159954944","https://openalex.org/W2170551349","https://openalex.org/W2173732482","https://openalex.org/W2229221169","https://openalex.org/W2338784266","https://openalex.org/W2343039634","https://openalex.org/W2465681871","https://openalex.org/W2515695158","https://openalex.org/W2533132894","https://openalex.org/W2586095009","https://openalex.org/W2724746375","https://openalex.org/W2760526698","https://openalex.org/W2773939681","https://openalex.org/W2950150251","https://openalex.org/W2951160681","https://openalex.org/W2952152744"],"related_works":["https://openalex.org/W2340204314","https://openalex.org/W4313598112","https://openalex.org/W2127106003","https://openalex.org/W3090971826","https://openalex.org/W2001561488","https://openalex.org/W3128872455","https://openalex.org/W3047585652","https://openalex.org/W2001037326","https://openalex.org/W4247428816","https://openalex.org/W2789608590"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":5}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
