{"id":"https://openalex.org/W2763682064","doi":"https://doi.org/10.1007/978-3-319-68204-4_10","title":"The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments","display_name":"The CEDAR Workbench: An Ontology-Assisted Environment for Authoring Metadata that Describe Scientific Experiments","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2763682064","doi":"https://doi.org/10.1007/978-3-319-68204-4_10","mag":"2763682064","pmid":"https://pubmed.ncbi.nlm.nih.gov/32219223"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-68204-4_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-68204-4_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1905.06480","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049424768","display_name":"Rafael S. Gon\u00e7alves","orcid":"https://orcid.org/0000-0003-1255-0125"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rafael S. Gon\u00e7alves","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018993179","display_name":"Martin J. O\u2019Connor","orcid":"https://orcid.org/0000-0002-2256-2421"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martin J. O\u2019Connor","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073479149","display_name":"Marcos Mart\u00ednez-Romero","orcid":"https://orcid.org/0000-0002-9814-3258"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Marcos Mart\u00ednez-Romero","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091291704","display_name":"Attila L. Egyedi","orcid":"https://orcid.org/0000-0003-0730-5053"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Attila L. Egyedi","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048795530","display_name":"Debra Willrett","orcid":"https://orcid.org/0000-0002-3767-2957"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debra Willrett","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044043304","display_name":"John Graybeal","orcid":"https://orcid.org/0000-0001-6875-5360"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John Graybeal","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009128820","display_name":"Mark A. Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Musen","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA"],"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5049424768"],"corresponding_institution_ids":["https://openalex.org/I97018004"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":9.9568,"has_fulltext":false,"cited_by_count":60,"citation_normalized_percentile":{"value":0.98680363,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"10588","issue":null,"first_page":"103","last_page":"110"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8526445627212524},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8269565105438232},{"id":"https://openalex.org/keywords/json","display_name":"JSON","score":0.8237878084182739},{"id":"https://openalex.org/keywords/workbench","display_name":"Workbench","score":0.8119146823883057},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.633326530456543},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.5627695918083191},{"id":"https://openalex.org/keywords/meta-data-services","display_name":"Meta Data Services","score":0.5584772825241089},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.4501032531261444},{"id":"https://openalex.org/keywords/metadata-repository","display_name":"Metadata repository","score":0.4365934133529663},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.41199198365211487},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.33688944578170776},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.3174378275871277},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.10070803761482239}],"concepts":[{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8526445627212524},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8269565105438232},{"id":"https://openalex.org/C2780416260","wikidata":"https://www.wikidata.org/wiki/Q2063","display_name":"JSON","level":2,"score":0.8237878084182739},{"id":"https://openalex.org/C2779145975","wikidata":"https://www.wikidata.org/wiki/Q347690","display_name":"Workbench","level":3,"score":0.8119146823883057},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.633326530456543},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.5627695918083191},{"id":"https://openalex.org/C136976847","wikidata":"https://www.wikidata.org/wiki/Q6822297","display_name":"Meta Data Services","level":4,"score":0.5584772825241089},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.4501032531261444},{"id":"https://openalex.org/C153048206","wikidata":"https://www.wikidata.org/wiki/Q3454922","display_name":"Metadata repository","level":3,"score":0.4365934133529663},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.41199198365211487},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.33688944578170776},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.3174378275871277},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.10070803761482239},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-319-68204-4_10","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-68204-4_10","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmid:32219223","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32219223","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"The semantic Web--ISWC ... : ... International Semantic Web Conference ... proceedings. International Semantic Web Conference","raw_type":null},{"id":"pmh:oai:arXiv.org:1905.06480","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.06480","pdf_url":"https://arxiv.org/pdf/1905.06480","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:7098808","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7098808","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Semant Web ISWC","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1905.06480","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.06480","pdf_url":"https://arxiv.org/pdf/1905.06480","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":25,"referenced_works":["https://openalex.org/W3560296","https://openalex.org/W1544923801","https://openalex.org/W1957272438","https://openalex.org/W2020152108","https://openalex.org/W2020541351","https://openalex.org/W2025738474","https://openalex.org/W2036288429","https://openalex.org/W2056652595","https://openalex.org/W2067819940","https://openalex.org/W2100453203","https://openalex.org/W2105233887","https://openalex.org/W2114224807","https://openalex.org/W2126777664","https://openalex.org/W2130430745","https://openalex.org/W2131660156","https://openalex.org/W2302501749","https://openalex.org/W2351118769","https://openalex.org/W2398549794","https://openalex.org/W2514068595","https://openalex.org/W2548298407","https://openalex.org/W2773787581","https://openalex.org/W2785897024","https://openalex.org/W2885206063","https://openalex.org/W2885895163","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2367337465","https://openalex.org/W2374379029","https://openalex.org/W3016521766","https://openalex.org/W2008531296","https://openalex.org/W2018424284","https://openalex.org/W3120829135","https://openalex.org/W2183628870","https://openalex.org/W2388609536","https://openalex.org/W2325085362","https://openalex.org/W4234211167"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":5},{"year":2022,"cited_by_count":22},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":8},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
