{"id":"https://openalex.org/W2735636650","doi":"https://doi.org/10.1007/978-3-319-67471-1_6","title":"Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF- $$\\beta $$ Signaling","display_name":"Identifying Functional Families of Trajectories in Biological Pathways by Soft Clustering: Application to TGF- $$\\beta $$ Signaling","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2735636650","doi":"https://doi.org/10.1007/978-3-319-67471-1_6","mag":"2735636650"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-67471-1_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-67471-1_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031115761","display_name":"Jean Coquet","orcid":"https://orcid.org/0000-0002-7008-6925"},"institutions":[{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I4210108239","display_name":"Institut de Recherche en Sant\u00e9, Environnement et Travail","ror":"https://ror.org/01p178v10","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I165283593","https://openalex.org/I4210108239","https://openalex.org/I49451733","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jean Coquet","raw_affiliation_strings":["INSERM U1085 IRSET, Universit\u00e9 de Rennes 1, 2 avenue Pr L\u00e9on Bernard, 35043, Rennes, Cedex, France","Universit\u00e9 de Rennes 1 - IRISA/INRIA, UMR6074, 263 avenue du G\u00e9n\u00e9ral Leclerc, 35042, Rennes, Cedex, France"],"affiliations":[{"raw_affiliation_string":"INSERM U1085 IRSET, Universit\u00e9 de Rennes 1, 2 avenue Pr L\u00e9on Bernard, 35043, Rennes, Cedex, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I154526488","https://openalex.org/I4210108239"]},{"raw_affiliation_string":"Universit\u00e9 de Rennes 1 - IRISA/INRIA, UMR6074, 263 avenue du G\u00e9n\u00e9ral Leclerc, 35042, Rennes, Cedex, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046388663","display_name":"Nathalie Th\u00e9ret","orcid":"https://orcid.org/0000-0002-5857-7828"},"institutions":[{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210108239","display_name":"Institut de Recherche en Sant\u00e9, Environnement et Travail","ror":"https://ror.org/01p178v10","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I165283593","https://openalex.org/I4210108239","https://openalex.org/I49451733","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nathalie Theret","raw_affiliation_strings":["INSERM U1085 IRSET, Universit\u00e9 de Rennes 1, 2 avenue Pr L\u00e9on Bernard, 35043, Rennes, Cedex, France","Universit\u00e9 de Rennes 1 - IRISA/INRIA, UMR6074, 263 avenue du G\u00e9n\u00e9ral Leclerc, 35042, Rennes, Cedex, France"],"affiliations":[{"raw_affiliation_string":"INSERM U1085 IRSET, Universit\u00e9 de Rennes 1, 2 avenue Pr L\u00e9on Bernard, 35043, Rennes, Cedex, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I154526488","https://openalex.org/I4210108239"]},{"raw_affiliation_string":"Universit\u00e9 de Rennes 1 - IRISA/INRIA, UMR6074, 263 avenue du G\u00e9n\u00e9ral Leclerc, 35042, Rennes, Cedex, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046268343","display_name":"Vincent Legagneux","orcid":"https://orcid.org/0000-0002-1417-6678"},"institutions":[{"id":"https://openalex.org/I4210108239","display_name":"Institut de Recherche en Sant\u00e9, Environnement et Travail","ror":"https://ror.org/01p178v10","country_code":"FR","type":"facility","lineage":["https://openalex.org/I154526488","https://openalex.org/I165283593","https://openalex.org/I4210108239","https://openalex.org/I49451733","https://openalex.org/I56067802"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Legagneux","raw_affiliation_strings":["INSERM U1085 IRSET, Universit\u00e9 de Rennes 1, 2 avenue Pr L\u00e9on Bernard, 35043, Rennes, Cedex, France"],"affiliations":[{"raw_affiliation_string":"INSERM U1085 IRSET, Universit\u00e9 de Rennes 1, 2 avenue Pr L\u00e9on Bernard, 35043, Rennes, Cedex, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I154526488","https://openalex.org/I4210108239"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085479796","display_name":"Olivier Dameron","orcid":"https://orcid.org/0000-0001-8959-7189"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en sciences et technologies du num\u00e9rique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I56067802","display_name":"Universit\u00e9 de Rennes","ror":"https://ror.org/015m7wh34","country_code":"FR","type":"education","lineage":["https://openalex.org/I56067802"]},{"id":"https://openalex.org/I2802519937","display_name":"Institut de Recherche en Informatique et Syst\u00e8mes Al\u00e9atoires","ror":"https://ror.org/00myn0z94","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I205703379","https://openalex.org/I2802204017","https://openalex.org/I2802519937","https://openalex.org/I28221208","https://openalex.org/I4210127572","https://openalex.org/I4210159245","https://openalex.org/I56067802"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Olivier Dameron","raw_affiliation_strings":["Universit\u00e9 de Rennes 1 - IRISA/INRIA, UMR6074, 263 avenue du G\u00e9n\u00e9ral Leclerc, 35042, Rennes, Cedex, France"],"affiliations":[{"raw_affiliation_string":"Universit\u00e9 de Rennes 1 - IRISA/INRIA, UMR6074, 263 avenue du G\u00e9n\u00e9ral Leclerc, 35042, Rennes, Cedex, France","institution_ids":["https://openalex.org/I56067802","https://openalex.org/I2802519937","https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5031115761"],"corresponding_institution_ids":["https://openalex.org/I1326498283","https://openalex.org/I154526488","https://openalex.org/I2802519937","https://openalex.org/I4210108239","https://openalex.org/I56067802"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.4525,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.63054304,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"91","last_page":"107"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11063","display_name":"Rough Sets and Fuzzy Logic","score":0.9718000292778015,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.7007561922073364},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6172930002212524},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.5959877371788025},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5857885479927063},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.563889741897583},{"id":"https://openalex.org/keywords/transforming-growth-factor-beta","display_name":"Transforming growth factor beta","score":0.5317785739898682},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5021166801452637},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5018608570098877},{"id":"https://openalex.org/keywords/cell-signaling","display_name":"Cell signaling","score":0.4360077381134033},{"id":"https://openalex.org/keywords/tgf-beta-signaling-pathway","display_name":"TGF beta signaling pathway","score":0.43089696764945984},{"id":"https://openalex.org/keywords/biological-pathway","display_name":"Biological pathway","score":0.4244343638420105},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.41890978813171387},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.33615630865097046},{"id":"https://openalex.org/keywords/transforming-growth-factor","display_name":"Transforming growth factor","score":0.32977694272994995},{"id":"https://openalex.org/keywords/signal-transduction","display_name":"Signal transduction","score":0.3282930254936218},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3239055871963501},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3028227984905243},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27867376804351807},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.1855214238166809},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.16400733590126038},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.11742058396339417}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.7007561922073364},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6172930002212524},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.5959877371788025},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5857885479927063},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.563889741897583},{"id":"https://openalex.org/C2778229498","wikidata":"https://www.wikidata.org/wiki/Q24785672","display_name":"Transforming growth factor beta","level":3,"score":0.5317785739898682},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5021166801452637},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5018608570098877},{"id":"https://openalex.org/C150555746","wikidata":"https://www.wikidata.org/wiki/Q210973","display_name":"Cell signaling","level":3,"score":0.4360077381134033},{"id":"https://openalex.org/C111001777","wikidata":"https://www.wikidata.org/wiki/Q3562192","display_name":"TGF beta signaling pathway","level":3,"score":0.43089696764945984},{"id":"https://openalex.org/C9927688","wikidata":"https://www.wikidata.org/wiki/Q4915012","display_name":"Biological pathway","level":4,"score":0.4244343638420105},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.41890978813171387},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.33615630865097046},{"id":"https://openalex.org/C118131993","wikidata":"https://www.wikidata.org/wiki/Q423671","display_name":"Transforming growth factor","level":2,"score":0.32977694272994995},{"id":"https://openalex.org/C62478195","wikidata":"https://www.wikidata.org/wiki/Q828130","display_name":"Signal transduction","level":2,"score":0.3282930254936218},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3239055871963501},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3028227984905243},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27867376804351807},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.1855214238166809},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.16400733590126038},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.11742058396339417},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-67471-1_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-67471-1_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":31,"referenced_works":["https://openalex.org/W1969353942","https://openalex.org/W1970054115","https://openalex.org/W1970098795","https://openalex.org/W1982380661","https://openalex.org/W1984162437","https://openalex.org/W1984441765","https://openalex.org/W1985911638","https://openalex.org/W2010422325","https://openalex.org/W2027860197","https://openalex.org/W2035036685","https://openalex.org/W2053648336","https://openalex.org/W2055605599","https://openalex.org/W2057156693","https://openalex.org/W2058276503","https://openalex.org/W2061053541","https://openalex.org/W2061958868","https://openalex.org/W2070333970","https://openalex.org/W2075332054","https://openalex.org/W2090099017","https://openalex.org/W2092059846","https://openalex.org/W2096766502","https://openalex.org/W2098658421","https://openalex.org/W2115643744","https://openalex.org/W2123125245","https://openalex.org/W2126606094","https://openalex.org/W2130410032","https://openalex.org/W2148315081","https://openalex.org/W2407460044","https://openalex.org/W2551025035","https://openalex.org/W3099614534","https://openalex.org/W4300596950"],"related_works":["https://openalex.org/W2163262592","https://openalex.org/W4240130371","https://openalex.org/W4385510321","https://openalex.org/W2246378037","https://openalex.org/W1968381227","https://openalex.org/W3208628584","https://openalex.org/W1988613013","https://openalex.org/W2563585289","https://openalex.org/W4210321202","https://openalex.org/W2036143395"],"abstract_inverted_index":null,"counts_by_year":[{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
