{"id":"https://openalex.org/W2609675155","doi":"https://doi.org/10.1007/978-3-319-58163-7_3","title":"Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext","display_name":"Mapping RNA-seq Data to a Transcript Graph via Approximate Pattern Matching to a Hypertext","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2609675155","doi":"https://doi.org/10.1007/978-3-319-58163-7_3","mag":"2609675155"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-58163-7_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-58163-7_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5080398207","display_name":"Stefano Beretta","orcid":"https://orcid.org/0000-0003-4375-004X"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Stefano Beretta","raw_affiliation_strings":["Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038691764","display_name":"Paola Bonizzoni","orcid":"https://orcid.org/0000-0001-7289-4988"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Paola Bonizzoni","raw_affiliation_strings":["Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030595155","display_name":"Luca Denti","orcid":"https://orcid.org/0000-0001-8786-2276"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Denti","raw_affiliation_strings":["Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103118099","display_name":"Marco Previtali","orcid":"https://orcid.org/0000-0003-3040-9539"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Marco Previtali","raw_affiliation_strings":["Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086249420","display_name":"Raffaella Rizzi","orcid":"https://orcid.org/0000-0001-9730-7516"},"institutions":[{"id":"https://openalex.org/I66752286","display_name":"University of Milano-Bicocca","ror":"https://ror.org/01ynf4891","country_code":"IT","type":"education","lineage":["https://openalex.org/I66752286"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Raffaella Rizzi","raw_affiliation_strings":["Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Informatics, Systems and Communication (DISCo), University of Milan\u2013Bicocca, Viale Sarca 336, Milan, Italy","institution_ids":["https://openalex.org/I66752286"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5080398207"],"corresponding_institution_ids":["https://openalex.org/I66752286"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":4.5249,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.94545886,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"49","last_page":"61"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6413023471832275},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5588412284851074},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.5458618998527527},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.5308238863945007},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.48103171586990356},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4531933069229126},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3891613185405731},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.31234031915664673},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2955320179462433},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25781160593032837},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2436668574810028},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23406469821929932},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.21181508898735046}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6413023471832275},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5588412284851074},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.5458618998527527},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5308238863945007},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.48103171586990356},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4531933069229126},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3891613185405731},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.31234031915664673},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2955320179462433},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25781160593032837},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2436668574810028},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23406469821929932},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.21181508898735046}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-58163-7_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-58163-7_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:boa.unimib.it:10281/168458","is_oa":false,"landing_page_url":"http://hdl.handle.net/10281/168458","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1573352354","https://openalex.org/W1978981589","https://openalex.org/W2025119259","https://openalex.org/W2054895735","https://openalex.org/W2068875797","https://openalex.org/W2097065948","https://openalex.org/W2102278945","https://openalex.org/W2108075537","https://openalex.org/W2108234281","https://openalex.org/W2140729960","https://openalex.org/W2143447881","https://openalex.org/W2143531254","https://openalex.org/W2169456326","https://openalex.org/W2169603381","https://openalex.org/W2195724570","https://openalex.org/W2301039091","https://openalex.org/W2344013120","https://openalex.org/W2496794807","https://openalex.org/W2912383825","https://openalex.org/W3100935868","https://openalex.org/W3145128584"],"related_works":["https://openalex.org/W2130439870","https://openalex.org/W2800537687","https://openalex.org/W178291922","https://openalex.org/W2147652847","https://openalex.org/W1976843764","https://openalex.org/W2000278701","https://openalex.org/W3215633333","https://openalex.org/W2349910028","https://openalex.org/W1671586832","https://openalex.org/W2151954452"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
