{"id":"https://openalex.org/W3102863871","doi":"https://doi.org/10.1007/978-3-319-56970-3_5","title":"A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases","display_name":"A Fast Approximate Algorithm for Mapping Long Reads to Large Reference Databases","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W3102863871","doi":"https://doi.org/10.1007/978-3-319-56970-3_5","mag":"3102863871"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-56970-3_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-56970-3_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102941841","display_name":"Chirag Jain","orcid":"https://orcid.org/0000-0001-7837-2128"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Chirag Jain","raw_affiliation_strings":["Georgia Institute of Technology, Atlanta, Georgia, 30332, USA","National Institutes of Health, Bethesda, Maryland, 20894, USA"],"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology, Atlanta, Georgia, 30332, USA","institution_ids":["https://openalex.org/I130701444"]},{"raw_affiliation_string":"National Institutes of Health, Bethesda, Maryland, 20894, USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061035699","display_name":"Alexander Dilthey","orcid":"https://orcid.org/0000-0002-6394-4581"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Dilthey","raw_affiliation_strings":["National Institutes of Health, Bethesda, Maryland, 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Institutes of Health, Bethesda, Maryland, 20894, USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042603880","display_name":"Sergey Koren","orcid":"https://orcid.org/0000-0002-1472-8962"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sergey Koren","raw_affiliation_strings":["National Institutes of Health, Bethesda, Maryland, 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Institutes of Health, Bethesda, Maryland, 20894, USA","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074347913","display_name":"Srinivas Aluru","orcid":"https://orcid.org/0000-0003-4279-469X"},"institutions":[{"id":"https://openalex.org/I130701444","display_name":"Georgia Institute of Technology","ror":"https://ror.org/01zkghx44","country_code":"US","type":"education","lineage":["https://openalex.org/I130701444"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Srinivas Aluru","raw_affiliation_strings":["Georgia Institute of Technology, Atlanta, Georgia, 30332, USA"],"affiliations":[{"raw_affiliation_string":"Georgia Institute of Technology, Atlanta, Georgia, 30332, USA","institution_ids":["https://openalex.org/I130701444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086869042","display_name":"Adam M. Phillippy","orcid":"https://orcid.org/0000-0003-2983-8934"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam M. Phillippy","raw_affiliation_strings":["National Institutes of Health, Bethesda, Maryland, 20894, USA"],"affiliations":[{"raw_affiliation_string":"National Institutes of Health, Bethesda, Maryland, 20894, USA","institution_ids":["https://openalex.org/I1299303238"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5102941841"],"corresponding_institution_ids":["https://openalex.org/I1299303238","https://openalex.org/I130701444"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":8.5984,"has_fulltext":false,"cited_by_count":47,"citation_normalized_percentile":{"value":0.9829303,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"66","last_page":"81"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9850000143051147,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8180952072143555},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.7951358556747437},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.7422893047332764},{"id":"https://openalex.org/keywords/nanopore-sequencing","display_name":"Nanopore sequencing","score":0.6619177460670471},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.5584396123886108},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5559955835342407},{"id":"https://openalex.org/keywords/memory-footprint","display_name":"Memory footprint","score":0.5164604187011719},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5153902769088745},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.468789666891098},{"id":"https://openalex.org/keywords/precision-and-recall","display_name":"Precision and recall","score":0.42759838700294495},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.32125037908554077},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2567688524723053},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.20949986577033997}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8180952072143555},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.7951358556747437},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.7422893047332764},{"id":"https://openalex.org/C126513998","wikidata":"https://www.wikidata.org/wiki/Q8973627","display_name":"Nanopore sequencing","level":4,"score":0.6619177460670471},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.5584396123886108},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5559955835342407},{"id":"https://openalex.org/C74912251","wikidata":"https://www.wikidata.org/wiki/Q6815727","display_name":"Memory footprint","level":2,"score":0.5164604187011719},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5153902769088745},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.468789666891098},{"id":"https://openalex.org/C81669768","wikidata":"https://www.wikidata.org/wiki/Q2359161","display_name":"Precision and recall","level":2,"score":0.42759838700294495},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.32125037908554077},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2567688524723053},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.20949986577033997},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-56970-3_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-56970-3_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":23,"referenced_works":["https://openalex.org/W1579534339","https://openalex.org/W1903088142","https://openalex.org/W1916919897","https://openalex.org/W1983403167","https://openalex.org/W1991003805","https://openalex.org/W2002438422","https://openalex.org/W2087064593","https://openalex.org/W2093931624","https://openalex.org/W2095685450","https://openalex.org/W2103441770","https://openalex.org/W2111295912","https://openalex.org/W2137759177","https://openalex.org/W2144560237","https://openalex.org/W2153805608","https://openalex.org/W2158714788","https://openalex.org/W2162055898","https://openalex.org/W2170551349","https://openalex.org/W2194172909","https://openalex.org/W2259815689","https://openalex.org/W2317095975","https://openalex.org/W2503273054","https://openalex.org/W2950150251","https://openalex.org/W6600291067"],"related_works":["https://openalex.org/W4383818008","https://openalex.org/W2189508481","https://openalex.org/W2951181326","https://openalex.org/W3121387483","https://openalex.org/W2607669908","https://openalex.org/W2377389766","https://openalex.org/W2133994800","https://openalex.org/W3090794301","https://openalex.org/W3004488615","https://openalex.org/W2993812209"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":9},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":1}],"updated_date":"2026-03-25T14:56:36.534964","created_date":"2025-10-10T00:00:00"}
