{"id":"https://openalex.org/W2606776638","doi":"https://doi.org/10.1007/978-3-319-56970-3_21","title":"Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding","display_name":"Quantifying the Impact of Non-coding Variants on Transcription Factor-DNA Binding","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2606776638","doi":"https://doi.org/10.1007/978-3-319-56970-3_21","mag":"2606776638","pmid":"https://pubmed.ncbi.nlm.nih.gov/28691125"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-56970-3_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-56970-3_21","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5501730","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102385742","display_name":"Jingkang Zhao","orcid":null},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jingkang Zhao","raw_affiliation_strings":["Center for Genomic and Computational Biology, Duke University, Durham NC 27708, USA","Program in Computational Biology and Bioinformatics, Duke University, Durham NC 27708, USA","Center for Genomic and Computational Biology, Duke University, Durham, North Carolina, 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomic and Computational Biology, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Center for Genomic and Computational Biology, Duke University, Durham, North Carolina, 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045075546","display_name":"Dongshunyi Li","orcid":"https://orcid.org/0000-0003-0861-0498"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dongshunyi Li","raw_affiliation_strings":["Department of Biostatistics and Bioinformatics, Duke University, Durham NC 27708, USA","Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina, 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina, 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064290525","display_name":"Jungkyun Seo","orcid":"https://orcid.org/0000-0001-5514-4421"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jungkyun Seo","raw_affiliation_strings":["Program in Computational Biology and Bioinformatics, Duke University, Durham NC 27708, USA","Program in Computational Biology and Bioinformatics, Duke University, Durham, North Carolina, 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Program in Computational Biology and Bioinformatics, Duke University, Durham, North Carolina, 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026198048","display_name":"Andrew S. Allen","orcid":"https://orcid.org/0000-0002-7232-2143"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew S. Allen","raw_affiliation_strings":["Center for Genomic and Computational Biology, Duke University, Durham NC 27708, USA","Department of Biostatistics and Bioinformatics, Duke University, Durham NC 27708, USA","Center for Genomic and Computational Biology, Duke University, Durham, North Carolina, 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomic and Computational Biology, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Center for Genomic and Computational Biology, Duke University, Durham, North Carolina, 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082030263","display_name":"Raluca Gord\u00e2n","orcid":"https://orcid.org/0000-0002-6404-6556"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Raluca Gord\u00e2n","raw_affiliation_strings":["Center for Genomic and Computational Biology, Duke University, Durham NC 27708, USA","Department of Biostatistics and Bioinformatics, Duke University, Durham NC 27708, USA","Department of Computer Science, Duke University, Durham NC 27708, USA","Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina, 27708, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomic and Computational Biology, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham NC 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biostatistics and Bioinformatics, Duke University, Durham, North Carolina, 27708, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5082030263"],"corresponding_institution_ids":["https://openalex.org/I170897317"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":8.6296,"has_fulltext":false,"cited_by_count":50,"citation_normalized_percentile":{"value":0.97735025,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"10229","issue":null,"first_page":"336","last_page":"352"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5721644163131714},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.560039758682251},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5228724479675293},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5173261165618896},{"id":"https://openalex.org/keywords/dna-binding-site","display_name":"DNA binding site","score":0.5163601636886597},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.48220908641815186},{"id":"https://openalex.org/keywords/transcription-factor","display_name":"Transcription factor","score":0.4617602527141571},{"id":"https://openalex.org/keywords/coding-region","display_name":"Coding region","score":0.4319697916507721},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.21050450205802917},{"id":"https://openalex.org/keywords/promoter","display_name":"Promoter","score":0.09937387704849243}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5721644163131714},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.560039758682251},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5228724479675293},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5173261165618896},{"id":"https://openalex.org/C3662595","wikidata":"https://www.wikidata.org/wiki/Q5205743","display_name":"DNA binding site","level":5,"score":0.5163601636886597},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.48220908641815186},{"id":"https://openalex.org/C86339819","wikidata":"https://www.wikidata.org/wiki/Q407384","display_name":"Transcription factor","level":3,"score":0.4617602527141571},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.4319697916507721},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.21050450205802917},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.09937387704849243}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-56970-3_21","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-56970-3_21","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmid:28691125","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28691125","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Research in computational molecular biology : ... Annual International Conference, RECOMB ... : proceedings. RECOMB (Conference : 2005- )","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:5501730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5501730","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Res Comput Mol Biol","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:5501730","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5501730","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Res Comput Mol Biol","raw_type":"Text"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.550000011920929,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1133919164","display_name":null,"funder_award_id":"P01-CA-142538","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G4734099753","display_name":null,"funder_award_id":"R01 GM117106","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"}],"funders":[{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1900337607","https://openalex.org/W1964733653","https://openalex.org/W1972792790","https://openalex.org/W1989919392","https://openalex.org/W1991381389","https://openalex.org/W1994122295","https://openalex.org/W2005546833","https://openalex.org/W2023386301","https://openalex.org/W2026690931","https://openalex.org/W2029530775","https://openalex.org/W2033169664","https://openalex.org/W2034145535","https://openalex.org/W2038282326","https://openalex.org/W2042392223","https://openalex.org/W2045791858","https://openalex.org/W2056572892","https://openalex.org/W2059145105","https://openalex.org/W2061834804","https://openalex.org/W2078059415","https://openalex.org/W2080152736","https://openalex.org/W2097396311","https://openalex.org/W2097598963","https://openalex.org/W2102473929","https://openalex.org/W2104549677","https://openalex.org/W2112621436","https://openalex.org/W2117396697","https://openalex.org/W2132955708","https://openalex.org/W2135030836","https://openalex.org/W2141820415","https://openalex.org/W2143238378","https://openalex.org/W2146393977","https://openalex.org/W2156627746","https://openalex.org/W2159324718","https://openalex.org/W2159664283","https://openalex.org/W2161849959","https://openalex.org/W2165102934","https://openalex.org/W2167296922","https://openalex.org/W2168991419","https://openalex.org/W2174602966","https://openalex.org/W2270152626","https://openalex.org/W2304402346","https://openalex.org/W2320983896","https://openalex.org/W2417483443","https://openalex.org/W2915607458"],"related_works":["https://openalex.org/W2385813177","https://openalex.org/W2108962753","https://openalex.org/W2171277769","https://openalex.org/W2066856346","https://openalex.org/W2045313050","https://openalex.org/W2029633625","https://openalex.org/W2354149132","https://openalex.org/W1973423104","https://openalex.org/W1995399546","https://openalex.org/W2082184019"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":2}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
