{"id":"https://openalex.org/W2599597882","doi":"https://doi.org/10.1007/978-3-319-56154-7_45","title":"Accelerating Smith-Waterman Alignment of Long DNA Sequences with OpenCL on FPGA","display_name":"Accelerating Smith-Waterman Alignment of Long DNA Sequences with OpenCL on FPGA","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2599597882","doi":"https://doi.org/10.1007/978-3-319-56154-7_45","mag":"2599597882"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-56154-7_45","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-56154-7_45","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://sedici.unlp.edu.ar/handle/10915/82872","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065094174","display_name":"Enzo Rucci","orcid":"https://orcid.org/0000-0001-6736-7358"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Enzo Rucci","raw_affiliation_strings":["III-LIDI, CONICET, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, 1900, La Plata, Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"III-LIDI, CONICET, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, 1900, La Plata, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048493144","display_name":"Carlos Garc\u00eda","orcid":"https://orcid.org/0000-0002-3470-1097"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Carlos Garcia","raw_affiliation_strings":["Depto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, 28040, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Depto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, 28040, Madrid, Spain","institution_ids":["https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040019079","display_name":"Guillermo Botella","orcid":"https://orcid.org/0000-0002-0848-2636"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Guillermo Botella","raw_affiliation_strings":["Depto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, 28040, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Depto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, 28040, Madrid, Spain","institution_ids":["https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101621664","display_name":"Armando De Giusti","orcid":"https://orcid.org/0000-0002-6459-3592"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Armando De Giusti","raw_affiliation_strings":["III-LIDI, CONICET, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, 1900, La Plata, Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"III-LIDI, CONICET, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, 1900, La Plata, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084392593","display_name":"Marcelo Naiouf","orcid":"https://orcid.org/0000-0001-9127-3212"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Marcelo Naiouf","raw_affiliation_strings":["III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, 1900, La Plata, Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, 1900, La Plata, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047526101","display_name":"Manuel Prieto","orcid":"https://orcid.org/0000-0003-0687-3737"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel Prieto-Matias","raw_affiliation_strings":["Depto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, 28040, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Depto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, 28040, Madrid, Spain","institution_ids":["https://openalex.org/I121748325"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5048493144"],"corresponding_institution_ids":["https://openalex.org/I121748325"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.3843,"has_fulltext":false,"cited_by_count":17,"citation_normalized_percentile":{"value":0.85760848,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"500","last_page":"511"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.980400025844574,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stratix","display_name":"Stratix","score":0.8977179527282715},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8591277599334717},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.7560491561889648},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.722911536693573},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7177570462226868},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.6638232469558716},{"id":"https://openalex.org/keywords/xeon-phi","display_name":"Xeon Phi","score":0.5985750555992126},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5825668573379517},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.55259108543396},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4951452314853668},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.4487510919570923},{"id":"https://openalex.org/keywords/computer-architecture","display_name":"Computer architecture","score":0.43839022517204285},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.30216461420059204},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1598428189754486},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.07664012908935547}],"concepts":[{"id":"https://openalex.org/C2776277307","wikidata":"https://www.wikidata.org/wiki/Q22074755","display_name":"Stratix","level":3,"score":0.8977179527282715},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8591277599334717},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.7560491561889648},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.722911536693573},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7177570462226868},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.6638232469558716},{"id":"https://openalex.org/C96972482","wikidata":"https://www.wikidata.org/wiki/Q1049168","display_name":"Xeon Phi","level":2,"score":0.5985750555992126},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5825668573379517},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.55259108543396},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4951452314853668},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.4487510919570923},{"id":"https://openalex.org/C118524514","wikidata":"https://www.wikidata.org/wiki/Q173212","display_name":"Computer architecture","level":1,"score":0.43839022517204285},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.30216461420059204},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1598428189754486},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.07664012908935547},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-56154-7_45","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-56154-7_45","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:sedici.unlp.edu.ar:10915/82872","is_oa":true,"landing_page_url":"http://sedici.unlp.edu.ar/handle/10915/82872","pdf_url":null,"source":{"id":"https://openalex.org/S4306400803","display_name":"El Servicio de Difusi\u00f3n de la Creaci\u00f3n Intelectual (National University of La Plata)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I874386039","host_organization_name":"Universidad Nacional de La Plata","host_organization_lineage":["https://openalex.org/I874386039"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Objeto de conferencia"}],"best_oa_location":{"id":"pmh:oai:sedici.unlp.edu.ar:10915/82872","is_oa":true,"landing_page_url":"http://sedici.unlp.edu.ar/handle/10915/82872","pdf_url":null,"source":{"id":"https://openalex.org/S4306400803","display_name":"El Servicio de Difusi\u00f3n de la Creaci\u00f3n Intelectual (National University of La Plata)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I874386039","host_organization_name":"Universidad Nacional de La Plata","host_organization_lineage":["https://openalex.org/I874386039"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Objeto de conferencia"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","score":0.8799999952316284,"id":"https://metadata.un.org/sdg/7"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W195890654","https://openalex.org/W1585577780","https://openalex.org/W1592614241","https://openalex.org/W1970608452","https://openalex.org/W1995106824","https://openalex.org/W2015292449","https://openalex.org/W2017972683","https://openalex.org/W2021342241","https://openalex.org/W2046220835","https://openalex.org/W2068448872","https://openalex.org/W2087064593","https://openalex.org/W2098232690","https://openalex.org/W2116715773","https://openalex.org/W2117500226","https://openalex.org/W2158714788","https://openalex.org/W2344543892","https://openalex.org/W2471092755","https://openalex.org/W2534566880"],"related_works":["https://openalex.org/W2475524688","https://openalex.org/W2739740241","https://openalex.org/W2085105049","https://openalex.org/W2592417500","https://openalex.org/W1974923383","https://openalex.org/W2526069705","https://openalex.org/W2024016913","https://openalex.org/W2019153376","https://openalex.org/W2599597882","https://openalex.org/W1586106326"],"abstract_inverted_index":null,"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":6}],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
