{"id":"https://openalex.org/W2616788541","doi":"https://doi.org/10.1007/978-3-319-49644-3_4","title":"Annotating Medical Image Data","display_name":"Annotating Medical Image Data","publication_year":2017,"publication_date":"2017-01-01","ids":{"openalex":"https://openalex.org/W2616788541","doi":"https://doi.org/10.1007/978-3-319-49644-3_4","mag":"2616788541"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-49644-3_4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-49644-3_4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-49644-3_4.pdf","source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cloud-Based Benchmarking of Medical Image Analysis","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-49644-3_4.pdf","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045897602","display_name":"Katharina Gr\u00fcnberg","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katharina Gr\u00fcnberg","raw_affiliation_strings":["University of Heidelberg, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003229825","display_name":"Oscar Jim\u00e9nez\u2013del\u2013Toro","orcid":"https://orcid.org/0000-0002-0628-3764"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Oscar Jimenez-del-Toro","raw_affiliation_strings":["University of Applied Sciences Western Switzerland (HES\u2013SO), Sierre, Switzerland"],"affiliations":[{"raw_affiliation_string":"University of Applied Sciences Western Switzerland (HES\u2013SO), Sierre, Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068049959","display_name":"Andr\u00e1s Jakab","orcid":"https://orcid.org/0000-0001-6291-9889"},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Andras Jakab","raw_affiliation_strings":["Medical University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Medical University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060814361","display_name":"Georg Langs","orcid":"https://orcid.org/0000-0002-5536-6873"},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Georg Langs","raw_affiliation_strings":["Medical University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Medical University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057225110","display_name":"Tom\u00e1s Salas","orcid":"https://orcid.org/0009-0002-2009-1731"},"institutions":[{"id":"https://openalex.org/I4210121249","display_name":"Ag\u00e8ncia de Qualitat i Avaluaci\u00f3 Sanit\u00e0ries de Catalunya","ror":"https://ror.org/01x7se580","country_code":"ES","type":"nonprofit","lineage":["https://openalex.org/I4210121249"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Tom\u00e0s Salas Fernandez","raw_affiliation_strings":["Agencia D\u2019Informci\u00f3, Avaluaci\u00f3 i Qualitat en Salut, Catalonia, (GENCAT), Spain","Agencia D'Informci\u00f3, Avaluaci\u00f3 i Qualitat en Salut, Catalonia, (GENCAT), Spain"],"affiliations":[{"raw_affiliation_string":"Agencia D\u2019Informci\u00f3, Avaluaci\u00f3 i Qualitat en Salut, Catalonia, (GENCAT), Spain","institution_ids":["https://openalex.org/I4210121249"]},{"raw_affiliation_string":"Agencia D'Informci\u00f3, Avaluaci\u00f3 i Qualitat en Salut, Catalonia, (GENCAT), Spain","institution_ids":["https://openalex.org/I4210121249"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004774441","display_name":"Marianne Winterstein","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marianne Winterstein","raw_affiliation_strings":["University of Heidelberg, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041978982","display_name":"Marc\u2010An\ufeffdr\u00e9 Weber","orcid":"https://orcid.org/0000-0003-3918-8066"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marc-Andr\u00e9 Weber","raw_affiliation_strings":["University of Heidelberg, Heidelberg, Germany"],"affiliations":[{"raw_affiliation_string":"University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058077820","display_name":"Markus Krenn","orcid":null},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Markus Krenn","raw_affiliation_strings":["Medical University of Vienna, Vienna, Austria"],"affiliations":[{"raw_affiliation_string":"Medical University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I76134821"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5003229825"],"corresponding_institution_ids":["https://openalex.org/I173439891"],"apc_list":null,"apc_paid":null,"fwci":0.9991,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.75338073,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"45","last_page":"67"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.9865000247955322,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9213429093360901},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7946988344192505},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.6868582367897034},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.6668773889541626},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5289991497993469},{"id":"https://openalex.org/keywords/automatic-image-annotation","display_name":"Automatic image annotation","score":0.5134352445602417},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5006527900695801},{"id":"https://openalex.org/keywords/limit","display_name":"Limit (mathematics)","score":0.4834752678871155},{"id":"https://openalex.org/keywords/judgement","display_name":"Judgement","score":0.4466875195503235},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.43748950958251953},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.38767266273498535},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.3449035882949829},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3423073887825012},{"id":"https://openalex.org/keywords/image-retrieval","display_name":"Image retrieval","score":0.2837724983692169},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.06626161932945251}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9213429093360901},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7946988344192505},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.6868582367897034},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.6668773889541626},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5289991497993469},{"id":"https://openalex.org/C199579030","wikidata":"https://www.wikidata.org/wiki/Q2851778","display_name":"Automatic image annotation","level":4,"score":0.5134352445602417},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5006527900695801},{"id":"https://openalex.org/C151201525","wikidata":"https://www.wikidata.org/wiki/Q177239","display_name":"Limit (mathematics)","level":2,"score":0.4834752678871155},{"id":"https://openalex.org/C2776548248","wikidata":"https://www.wikidata.org/wiki/Q12621536","display_name":"Judgement","level":2,"score":0.4466875195503235},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.43748950958251953},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.38767266273498535},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.3449035882949829},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3423073887825012},{"id":"https://openalex.org/C1667742","wikidata":"https://www.wikidata.org/wiki/Q10927554","display_name":"Image retrieval","level":3,"score":0.2837724983692169},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.06626161932945251},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-49644-3_4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-49644-3_4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-49644-3_4.pdf","source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cloud-Based Benchmarking of Medical Image Analysis","raw_type":"book-chapter"},{"id":"pmh:doi:10.5167/uzh-142577","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4406922384","display_name":"Open MIND","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1007/978-3-319-49644-3_4","is_oa":true,"landing_page_url":"https://doi.org/10.1007/978-3-319-49644-3_4","pdf_url":"https://link.springer.com/content/pdf/10.1007%2F978-3-319-49644-3_4.pdf","source":null,"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cloud-Based Benchmarking of Medical Image Analysis","raw_type":"book-chapter"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3829048491","display_name":null,"funder_award_id":"FP7/2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3981126665","display_name":null,"funder_award_id":"Seventh Framework Programme","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5593277320","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5702163051","display_name":null,"funder_award_id":"FP7/2007","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G7481977970","display_name":"VISual Concept Extraction challenge in RAdioLogy","funder_award_id":"318068","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2616788541.pdf","grobid_xml":"https://content.openalex.org/works/W2616788541.grobid-xml"},"referenced_works_count":15,"referenced_works":["https://openalex.org/W39360085","https://openalex.org/W88603068","https://openalex.org/W1971217638","https://openalex.org/W1987869189","https://openalex.org/W1993127575","https://openalex.org/W1993947467","https://openalex.org/W2022956765","https://openalex.org/W2057130870","https://openalex.org/W2083969706","https://openalex.org/W2101303301","https://openalex.org/W2107166114","https://openalex.org/W2127890285","https://openalex.org/W2163096274","https://openalex.org/W2412453619","https://openalex.org/W4239721925"],"related_works":["https://openalex.org/W2376984068","https://openalex.org/W2119028572","https://openalex.org/W2152482390","https://openalex.org/W2365617273","https://openalex.org/W2349392800","https://openalex.org/W2061851981","https://openalex.org/W2804095050","https://openalex.org/W2117928543","https://openalex.org/W2111235226","https://openalex.org/W2115932653"],"abstract_inverted_index":{"This":[0,119,163],"chapter":[1],"describes":[2],"the":[3,6,14,21,34,67,71,92,123,133,138,141,161,165,168],"annotation":[4,40,68,134],"of":[5,18,50,140,160,167,170],"medical":[7],"image":[8],"data":[9],"that":[10,46,105],"were":[11,47,56],"used":[12],"in":[13,20,125],"VISCERAL":[15],"project.":[16],"Annotation":[17],"regions":[19],"3D":[22,80],"images":[23],"is":[24],"non-trivial,":[25],"and":[26,37,58,77,110,115,128,153],"tools":[27,45],"need":[28],"to":[29,32,90,108,112,121,130,136],"be":[30],"chosen":[31,65,83],"limit":[33,137],"manual":[35],"work":[36],"have":[38],"semi-automated":[39],"available.":[41],"For":[42,147],"this,":[43],"several":[44,148],"available":[48],"free":[49],"charge":[51],"or":[52],"with":[53,87],"limited":[54],"costs":[55],"tested":[57],"compared.":[59],"The":[60],"GeoS":[61],"tool":[62,104],"was":[63,82,98,155],"finally":[64],"for":[66,75,84],"based":[69],"on":[70],"detailed":[72,95],"analysis,":[73],"allowing":[74],"efficient":[76],"effective":[78],"annotations.":[79,93],"slice":[81],"smaller":[85],"structures":[86],"low":[88],"contrast":[89],"complement":[91],"A":[94],"quality":[96,169],"control":[97],"also":[99,129],"installed,":[100],"including":[101],"an":[102],"automatic":[103,171],"attributes":[106],"organs":[107],"annotate":[109],"volumes":[111],"specific":[113,126],"annotators,":[114],"then":[116],"compares":[117],"results.":[118],"allowed":[120],"judge":[122],"confidence":[124],"annotators":[127],"iteratively":[131],"refine":[132],"instructions":[135],"subjectivity":[139,151],"task":[142],"as":[143,145],"much":[144],"possible.":[146],"structures,":[149],"some":[150],"remains":[152],"this":[154],"measured":[156],"via":[157],"double":[158],"annotations":[159],"structure.":[162],"allows":[164],"judgement":[166],"segmentations.":[172]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
