{"id":"https://openalex.org/W2510582472","doi":"https://doi.org/10.1007/978-3-319-46604-0_18","title":"3-D Density Kernel Estimation for Counting in Microscopy Image Volumes Using 3-D Image Filters and Random Decision Trees","display_name":"3-D Density Kernel Estimation for Counting in Microscopy Image Volumes Using 3-D Image Filters and Random Decision Trees","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2510582472","doi":"https://doi.org/10.1007/978-3-319-46604-0_18","mag":"2510582472"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-46604-0_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-46604-0_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5029490828","display_name":"Dominic Waithe","orcid":"https://orcid.org/0000-0003-2685-4226"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Dominic Waithe","raw_affiliation_strings":["Wolfson Imaging Centre, Weatherall Insitute of Molecular Medicine, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Wolfson Imaging Centre, Weatherall Insitute of Molecular Medicine, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I4210110594","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018727000","display_name":"Martin Hailstone","orcid":"https://orcid.org/0000-0001-9326-3827"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin Hailstone","raw_affiliation_strings":["Department of Biochemistry, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049749009","display_name":"Mukesh Kumar Lalwani","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mukesh Kumar Lalwani","raw_affiliation_strings":["MRC Molecular Haematology Unit, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"MRC Molecular Haematology Unit, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022411996","display_name":"Richard M. Parton","orcid":"https://orcid.org/0000-0002-2152-4271"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard Parton","raw_affiliation_strings":["Department of Biochemistry, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035895392","display_name":"Yang Lu","orcid":"https://orcid.org/0000-0002-8921-0770"},"institutions":[{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Lu Yang","raw_affiliation_strings":["Wolfson Imaging Centre, Weatherall Insitute of Molecular Medicine, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Wolfson Imaging Centre, Weatherall Insitute of Molecular Medicine, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I4210110594","https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082317757","display_name":"Roger Patient","orcid":"https://orcid.org/0000-0002-1568-8165"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Roger Patient","raw_affiliation_strings":["MRC Molecular Haematology Unit, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"MRC Molecular Haematology Unit, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067171744","display_name":"Christian Eggeling","orcid":"https://orcid.org/0000-0002-3698-5599"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210110594","display_name":"MRC Weatherall Institute of Molecular Medicine","ror":"https://ror.org/01q496a73","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I90344618"]},{"id":"https://openalex.org/I4210124851","display_name":"MRC Human Immunology Unit","ror":"https://ror.org/02kcpr174","country_code":"GB","type":"facility","lineage":["https://openalex.org/I40120149","https://openalex.org/I40120149","https://openalex.org/I4210087105","https://openalex.org/I4210087105","https://openalex.org/I4210110594","https://openalex.org/I4210124851","https://openalex.org/I90344618","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christian Eggeling","raw_affiliation_strings":["MRC Human Immunology Unit, University of Oxford, Oxford, UK","Wolfson Imaging Centre, Weatherall Insitute of Molecular Medicine, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"MRC Human Immunology Unit, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I4210124851","https://openalex.org/I40120149"]},{"raw_affiliation_string":"Wolfson Imaging Centre, Weatherall Insitute of Molecular Medicine, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I4210110594","https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047396612","display_name":"Ilan Davis","orcid":"https://orcid.org/0000-0002-5385-3053"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ilan Davis","raw_affiliation_strings":["Department of Biochemistry, University of Oxford, Oxford, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, University of Oxford, Oxford, UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5029490828"],"corresponding_institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210110594"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.7994,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.86104513,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"244","last_page":"255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9851999878883362,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6796971559524536},{"id":"https://openalex.org/keywords/kernel-density-estimation","display_name":"Kernel density estimation","score":0.6599453091621399},{"id":"https://openalex.org/keywords/voxel","display_name":"Voxel","score":0.6236070394515991},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5933016538619995},{"id":"https://openalex.org/keywords/kernel","display_name":"Kernel (algebra)","score":0.566571056842804},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.44613462686538696},{"id":"https://openalex.org/keywords/density-estimation","display_name":"Density estimation","score":0.4443598985671997},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4442073404788971},{"id":"https://openalex.org/keywords/random-forest","display_name":"Random forest","score":0.4400993585586548},{"id":"https://openalex.org/keywords/random-walker-algorithm","display_name":"Random walker algorithm","score":0.43660280108451843},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4361700415611267},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.43268972635269165},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3441106379032135},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20999306440353394},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.09506070613861084}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6796971559524536},{"id":"https://openalex.org/C71134354","wikidata":"https://www.wikidata.org/wiki/Q458825","display_name":"Kernel density estimation","level":3,"score":0.6599453091621399},{"id":"https://openalex.org/C54170458","wikidata":"https://www.wikidata.org/wiki/Q663554","display_name":"Voxel","level":2,"score":0.6236070394515991},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5933016538619995},{"id":"https://openalex.org/C74193536","wikidata":"https://www.wikidata.org/wiki/Q574844","display_name":"Kernel (algebra)","level":2,"score":0.566571056842804},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.44613462686538696},{"id":"https://openalex.org/C189508267","wikidata":"https://www.wikidata.org/wiki/Q17088227","display_name":"Density estimation","level":3,"score":0.4443598985671997},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4442073404788971},{"id":"https://openalex.org/C169258074","wikidata":"https://www.wikidata.org/wiki/Q245748","display_name":"Random forest","level":2,"score":0.4400993585586548},{"id":"https://openalex.org/C105045736","wikidata":"https://www.wikidata.org/wiki/Q7292002","display_name":"Random walker algorithm","level":3,"score":0.43660280108451843},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4361700415611267},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.43268972635269165},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3441106379032135},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20999306440353394},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.09506070613861084},{"id":"https://openalex.org/C185429906","wikidata":"https://www.wikidata.org/wiki/Q1130160","display_name":"Estimator","level":2,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-46604-0_18","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-46604-0_18","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:ora.ox.ac.uk:uuid:dc18f849-635d-4ce1-9bf0-18b2f959846d","is_oa":false,"landing_page_url":"https://ora.ox.ac.uk/objects/uuid:dc18f849-635d-4ce1-9bf0-18b2f959846d","pdf_url":null,"source":{"id":"https://openalex.org/S4306402636","display_name":"Oxford University Research Archive (ORA) (University of Oxford)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I40120149","host_organization_name":"University of Oxford","host_organization_lineage":["https://openalex.org/I40120149"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference item"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/16","score":0.6499999761581421,"display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G738990282","display_name":null,"funder_award_id":"MR/K01577X/1","funder_id":"https://openalex.org/F4320334626","funder_display_name":"Medical Research Council"}],"funders":[{"id":"https://openalex.org/F4320334626","display_name":"Medical Research Council","ror":"https://ror.org/03x94j517"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W116922145","https://openalex.org/W163771580","https://openalex.org/W1003853626","https://openalex.org/W1519030660","https://openalex.org/W1542079534","https://openalex.org/W1972088908","https://openalex.org/W1989396876","https://openalex.org/W2025818287","https://openalex.org/W2032159743","https://openalex.org/W2053270078","https://openalex.org/W2056132907","https://openalex.org/W2065311834","https://openalex.org/W2066521860","https://openalex.org/W2079054072","https://openalex.org/W2092877776","https://openalex.org/W2094314563","https://openalex.org/W2094503343","https://openalex.org/W2094944422","https://openalex.org/W2103500440","https://openalex.org/W2133059825","https://openalex.org/W2140775860","https://openalex.org/W2145983039","https://openalex.org/W2161169163","https://openalex.org/W2166905450","https://openalex.org/W2207893099","https://openalex.org/W2293083603","https://openalex.org/W2896018297","https://openalex.org/W2911964244"],"related_works":["https://openalex.org/W1482149696","https://openalex.org/W2144201579","https://openalex.org/W4240479520","https://openalex.org/W3123419490","https://openalex.org/W2007242302","https://openalex.org/W4311428604","https://openalex.org/W1502956129","https://openalex.org/W4251895760","https://openalex.org/W3181529928","https://openalex.org/W2026307144"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
