{"id":"https://openalex.org/W2505740042","doi":"https://doi.org/10.1007/978-3-319-44332-4_17","title":"Improving Genome Assemblies Using Multi-platform Sequence Data","display_name":"Improving Genome Assemblies Using Multi-platform Sequence Data","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2505740042","doi":"https://doi.org/10.1007/978-3-319-44332-4_17","mag":"2505740042"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-44332-4_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-44332-4_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001022595","display_name":"P\u0131nar Kavak","orcid":null},"institutions":[{"id":"https://openalex.org/I198068145","display_name":"Scientific and Technological Research Council of Turkey","ror":"https://ror.org/04w9kkr77","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145"]},{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"P\u0131nar Kavak","raw_affiliation_strings":["Advanced Genomics and Bioinformatics Research Group (\u0130GBAM), B\u0130LGEM, The Scientific and Technological Research Council of Turkey (T\u00dcB\u0130TAK), 41470, Kocaeli, Gebze, Turkey","Department of Computer Engineering, Bo\u011fazi\u00e7i University, 34342, \u0130stanbul, Bebek, Turkey"],"affiliations":[{"raw_affiliation_string":"Advanced Genomics and Bioinformatics Research Group (\u0130GBAM), B\u0130LGEM, The Scientific and Technological Research Council of Turkey (T\u00dcB\u0130TAK), 41470, Kocaeli, Gebze, Turkey","institution_ids":["https://openalex.org/I198068145"]},{"raw_affiliation_string":"Department of Computer Engineering, Bo\u011fazi\u00e7i University, 34342, \u0130stanbul, Bebek, Turkey","institution_ids":["https://openalex.org/I4405392"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066206680","display_name":"Bekir Erg\u00fcner","orcid":"https://orcid.org/0000-0001-5475-0892"},"institutions":[{"id":"https://openalex.org/I198068145","display_name":"Scientific and Technological Research Council of Turkey","ror":"https://ror.org/04w9kkr77","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Bekir Erg\u00fcner","raw_affiliation_strings":["Advanced Genomics and Bioinformatics Research Group (\u0130GBAM), B\u0130LGEM, The Scientific and Technological Research Council of Turkey (T\u00dcB\u0130TAK), 41470, Kocaeli, Gebze, Turkey"],"affiliations":[{"raw_affiliation_string":"Advanced Genomics and Bioinformatics Research Group (\u0130GBAM), B\u0130LGEM, The Scientific and Technological Research Council of Turkey (T\u00dcB\u0130TAK), 41470, Kocaeli, Gebze, Turkey","institution_ids":["https://openalex.org/I198068145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017360009","display_name":"Duran \u00dcstek","orcid":"https://orcid.org/0000-0002-0060-2859"},"institutions":[{"id":"https://openalex.org/I3125470973","display_name":"Istanbul Medipol University","ror":"https://ror.org/037jwzz50","country_code":"TR","type":"education","lineage":["https://openalex.org/I3125470973"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Duran \u00dcstek","raw_affiliation_strings":["Department of Medical Genetics, \u0130stanbul Medipol University, 34810, \u0130stanbul, Beykoz, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Medical Genetics, \u0130stanbul Medipol University, 34810, \u0130stanbul, Beykoz, Turkey","institution_ids":["https://openalex.org/I3125470973"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102008153","display_name":"Bayram Y\u00fcksel","orcid":"https://orcid.org/0009-0009-4110-8775"},"institutions":[{"id":"https://openalex.org/I198068145","display_name":"Scientific and Technological Research Council of Turkey","ror":"https://ror.org/04w9kkr77","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145"]},{"id":"https://openalex.org/I4210115083","display_name":"T\u00dcB\u0130TAK Marmara Research Center","ror":"https://ror.org/02g99an58","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145","https://openalex.org/I4210115083"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Bayram Y\u00fcksel","raw_affiliation_strings":["T\u00dcB\u0130TAK - MAM - GMBE (The Scientific and Technological Research Council of Turkey, Genetic Engineering and Biotechnology Institute), 41470, Kocaeli, Gebze, Turkey"],"affiliations":[{"raw_affiliation_string":"T\u00dcB\u0130TAK - MAM - GMBE (The Scientific and Technological Research Council of Turkey, Genetic Engineering and Biotechnology Institute), 41470, Kocaeli, Gebze, Turkey","institution_ids":["https://openalex.org/I198068145","https://openalex.org/I4210115083"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031031528","display_name":"Mahmut \u015eamil Sa\u011f\u0131ro\u011flu","orcid":null},"institutions":[{"id":"https://openalex.org/I198068145","display_name":"Scientific and Technological Research Council of Turkey","ror":"https://ror.org/04w9kkr77","country_code":"TR","type":"government","lineage":["https://openalex.org/I198068145"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Mahmut \u015eamil Sa\u011f\u0131ro\u011flu","raw_affiliation_strings":["Advanced Genomics and Bioinformatics Research Group (\u0130GBAM), B\u0130LGEM, The Scientific and Technological Research Council of Turkey (T\u00dcB\u0130TAK), 41470, Kocaeli, Gebze, Turkey"],"affiliations":[{"raw_affiliation_string":"Advanced Genomics and Bioinformatics Research Group (\u0130GBAM), B\u0130LGEM, The Scientific and Technological Research Council of Turkey (T\u00dcB\u0130TAK), 41470, Kocaeli, Gebze, Turkey","institution_ids":["https://openalex.org/I198068145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030496360","display_name":"Tunga G\u00fcng\u00f6r","orcid":"https://orcid.org/0000-0001-9448-9422"},"institutions":[{"id":"https://openalex.org/I4405392","display_name":"Bo\u011fazi\u00e7i University","ror":"https://ror.org/03z9tma90","country_code":"TR","type":"education","lineage":["https://openalex.org/I4405392"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Tunga G\u00fcng\u00f6r","raw_affiliation_strings":["Department of Computer Engineering, Bo\u011fazi\u00e7i University, 34342, \u0130stanbul, Bebek, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Bo\u011fazi\u00e7i University, 34342, \u0130stanbul, Bebek, Turkey","institution_ids":["https://openalex.org/I4405392"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5074885623","display_name":"Can Alkan","orcid":"https://orcid.org/0000-0002-5443-0706"},"institutions":[{"id":"https://openalex.org/I168864056","display_name":"Bilkent University","ror":"https://ror.org/02vh8a032","country_code":"TR","type":"education","lineage":["https://openalex.org/I168864056"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Can Alkan","raw_affiliation_strings":["Department of Computer Engineering, Bilkent University, 06800, Ankara, Bilkent, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Bilkent University, 06800, Ankara, Bilkent, Turkey","institution_ids":["https://openalex.org/I168864056"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5001022595","https://openalex.org/A5074885623"],"corresponding_institution_ids":["https://openalex.org/I168864056","https://openalex.org/I198068145","https://openalex.org/I4405392"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.5376,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.65474625,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"220","last_page":"232"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9814000129699707,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8124241828918457},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.7905468940734863},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.710976243019104},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5844706296920776},{"id":"https://openalex.org/keywords/hybrid-genome-assembly","display_name":"Hybrid genome assembly","score":0.5625388622283936},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.41282787919044495},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41251859068870544},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.30173689126968384},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.098574697971344}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8124241828918457},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.7905468940734863},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.710976243019104},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5844706296920776},{"id":"https://openalex.org/C113425843","wikidata":"https://www.wikidata.org/wiki/Q5953213","display_name":"Hybrid genome assembly","level":5,"score":0.5625388622283936},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.41282787919044495},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41251859068870544},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.30173689126968384},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.098574697971344},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-44332-4_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-44332-4_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:repository.bilkent.edu.tr:11693/37501","is_oa":false,"landing_page_url":"http://hdl.handle.net/11693/37501","pdf_url":null,"source":{"id":"https://openalex.org/S4306400079","display_name":"Bilkent University Institutional Repository (Bilkent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I168864056","host_organization_name":"Bilkent University","host_organization_lineage":["https://openalex.org/I168864056"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Computational Intelligence Methods for Bioinformatics and Biostatistics - 12th International Meeting, CIBB 2015","raw_type":"Conference Paper"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W45443282","https://openalex.org/W1635391495","https://openalex.org/W1778776476","https://openalex.org/W1966822396","https://openalex.org/W2019208141","https://openalex.org/W2055043387","https://openalex.org/W2055666215","https://openalex.org/W2096634299","https://openalex.org/W2097529842","https://openalex.org/W2115501618","https://openalex.org/W2120457919","https://openalex.org/W2120902911","https://openalex.org/W2127651281","https://openalex.org/W2130530163","https://openalex.org/W2142749416","https://openalex.org/W2145061105","https://openalex.org/W2159998739","https://openalex.org/W2160969485","https://openalex.org/W2171475724","https://openalex.org/W2293843125"],"related_works":["https://openalex.org/W3167837387","https://openalex.org/W2127651281","https://openalex.org/W2993223466","https://openalex.org/W2949198880","https://openalex.org/W2944010518","https://openalex.org/W2157888653","https://openalex.org/W2131813051","https://openalex.org/W2613464961","https://openalex.org/W2089480001","https://openalex.org/W2589404674"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
