{"id":"https://openalex.org/W2482013044","doi":"https://doi.org/10.1007/978-3-319-44332-4_15","title":"The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens","display_name":"The Challenges of Interpreting Phosphoproteomics Data: A Critical View Through the Bioinformatics Lens","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2482013044","doi":"https://doi.org/10.1007/978-3-319-44332-4_15","mag":"2482013044"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-44332-4_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-44332-4_15","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078651775","display_name":"Panayotis Vlastaridis","orcid":null},"institutions":[{"id":"https://openalex.org/I145722265","display_name":"University of Thessaly","ror":"https://ror.org/04v4g9h31","country_code":"GR","type":"education","lineage":["https://openalex.org/I145722265"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Panayotis Vlastaridis","raw_affiliation_strings":["Bioinformatics Laboratory, Department of Biochemistry and Biotechnology, University of Thessaly, Larisa, Greece"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Department of Biochemistry and Biotechnology, University of Thessaly, Larisa, Greece","institution_ids":["https://openalex.org/I145722265"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075883279","display_name":"Stephen G. Oliver","orcid":"https://orcid.org/0000-0003-3410-6439"},"institutions":[{"id":"https://openalex.org/I241749","display_name":"University of Cambridge","ror":"https://ror.org/013meh722","country_code":"GB","type":"education","lineage":["https://openalex.org/I241749"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephen G. Oliver","raw_affiliation_strings":["Department of Biochemistry, Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK"],"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Cambridge Systems Biology Centre, University of Cambridge, Cambridge, UK","institution_ids":["https://openalex.org/I241749"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070738091","display_name":"Yves Van de Peer","orcid":"https://orcid.org/0000-0003-4327-3730"},"institutions":[{"id":"https://openalex.org/I4210098178","display_name":"VIB-UGent Center for Plant Systems Biology","ror":"https://ror.org/01qnqmc89","country_code":"BE","type":"facility","lineage":["https://openalex.org/I2802017950","https://openalex.org/I32597200","https://openalex.org/I4210098178"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I69552723","display_name":"University of Pretoria","ror":"https://ror.org/00g0p6g84","country_code":"ZA","type":"education","lineage":["https://openalex.org/I69552723"]}],"countries":["BE","ZA"],"is_corresponding":false,"raw_author_name":"Yves Van de Peer","raw_affiliation_strings":["Bioinformatics Institute Ghent, Technologiepark 927, 9052, Ghent, Belgium","Department of Genetics, Genomics Research Institute, University of Pretoria, Pretoria, 0028, South Africa","Department of Plant Systems Biology, VIB, Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Institute Ghent, Technologiepark 927, 9052, Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]},{"raw_affiliation_string":"Department of Genetics, Genomics Research Institute, University of Pretoria, Pretoria, 0028, South Africa","institution_ids":["https://openalex.org/I69552723"]},{"raw_affiliation_string":"Department of Plant Systems Biology, VIB, Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium","institution_ids":["https://openalex.org/I4210098178","https://openalex.org/I32597200"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5063999924","display_name":"Grigoris D. Amoutzias","orcid":"https://orcid.org/0000-0001-5961-964X"},"institutions":[{"id":"https://openalex.org/I145722265","display_name":"University of Thessaly","ror":"https://ror.org/04v4g9h31","country_code":"GR","type":"education","lineage":["https://openalex.org/I145722265"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Grigoris D. Amoutzias","raw_affiliation_strings":["Bioinformatics Laboratory, Department of Biochemistry and Biotechnology, University of Thessaly, Larisa, Greece"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Laboratory, Department of Biochemistry and Biotechnology, University of Thessaly, Larisa, Greece","institution_ids":["https://openalex.org/I145722265"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5078651775"],"corresponding_institution_ids":["https://openalex.org/I145722265"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.7251,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.81938326,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"196","last_page":"204"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10683","display_name":"Mass Spectrometry Techniques and Applications","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphoproteomics","display_name":"Phosphoproteomics","score":0.9114206433296204},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7195843458175659},{"id":"https://openalex.org/keywords/phosphopeptide","display_name":"Phosphopeptide","score":0.6045339107513428},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4829220473766327},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4551007151603699},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4154576063156128},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.35961031913757324},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21754345297813416},{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.1774350106716156},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.16342979669570923},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06544864177703857}],"concepts":[{"id":"https://openalex.org/C6675166","wikidata":"https://www.wikidata.org/wiki/Q7187538","display_name":"Phosphoproteomics","level":5,"score":0.9114206433296204},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7195843458175659},{"id":"https://openalex.org/C2779933727","wikidata":"https://www.wikidata.org/wiki/Q7187535","display_name":"Phosphopeptide","level":3,"score":0.6045339107513428},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4829220473766327},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4551007151603699},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4154576063156128},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.35961031913757324},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21754345297813416},{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.1774350106716156},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.16342979669570923},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06544864177703857},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-44332-4_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-44332-4_15","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:archive.ugent.be:8500088","is_oa":false,"landing_page_url":"https://biblio.ugent.be/publication/8500088","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN: 9783319443324","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:ir.lib.uth.gr:11615/80689","is_oa":false,"landing_page_url":"http://hdl.handle.net/11615/80689","pdf_url":null,"source":{"id":"https://openalex.org/S4306400243","display_name":"University of Thessaly Institutional Repository (University of Thessaly)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I145722265","host_organization_name":"University of Thessaly","host_organization_lineage":["https://openalex.org/I145722265"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)","raw_type":"conferenceItem"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1525091092","https://openalex.org/W1758188602","https://openalex.org/W1968403457","https://openalex.org/W1977316131","https://openalex.org/W1980506273","https://openalex.org/W1982564236","https://openalex.org/W1986061203","https://openalex.org/W1990710928","https://openalex.org/W1996310767","https://openalex.org/W1997835441","https://openalex.org/W2004279245","https://openalex.org/W2012079366","https://openalex.org/W2013743510","https://openalex.org/W2020459598","https://openalex.org/W2021469232","https://openalex.org/W2023090988","https://openalex.org/W2035077545","https://openalex.org/W2038801176","https://openalex.org/W2040709819","https://openalex.org/W2043417285","https://openalex.org/W2050654434","https://openalex.org/W2052114961","https://openalex.org/W2052141890","https://openalex.org/W2060747252","https://openalex.org/W2064207547","https://openalex.org/W2073577982","https://openalex.org/W2078964925","https://openalex.org/W2081954164","https://openalex.org/W2085289028","https://openalex.org/W2090806203","https://openalex.org/W2102025585","https://openalex.org/W2103174201","https://openalex.org/W2104107382","https://openalex.org/W2107726132","https://openalex.org/W2114067189","https://openalex.org/W2117665293","https://openalex.org/W2128987420","https://openalex.org/W2130190973","https://openalex.org/W2133347001","https://openalex.org/W2135517348","https://openalex.org/W2137198216","https://openalex.org/W2138573001","https://openalex.org/W2140638448","https://openalex.org/W2144864517","https://openalex.org/W2147013899","https://openalex.org/W2151031196","https://openalex.org/W2161651587","https://openalex.org/W2169424993","https://openalex.org/W2170283197","https://openalex.org/W2276896823"],"related_works":["https://openalex.org/W2063527102","https://openalex.org/W2055152749","https://openalex.org/W2166872160","https://openalex.org/W1999971214","https://openalex.org/W1975234428","https://openalex.org/W2047196168","https://openalex.org/W149613537","https://openalex.org/W27622180","https://openalex.org/W2909907179","https://openalex.org/W1993754486"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":2}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
