{"id":"https://openalex.org/W2484518614","doi":"https://doi.org/10.1007/978-3-319-32152-3_22","title":"Performance Analysis of a Parallel, Multi-node Pipeline for DNA Sequencing","display_name":"Performance Analysis of a Parallel, Multi-node Pipeline for DNA Sequencing","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2484518614","doi":"https://doi.org/10.1007/978-3-319-32152-3_22","mag":"2484518614"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-32152-3_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-32152-3_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/1854/LU-8521297","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056854080","display_name":"Dries Decap","orcid":"https://orcid.org/0000-0002-1710-5541"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]},{"id":"https://openalex.org/I39327780","display_name":"iMinds","ror":"https://ror.org/03baec336","country_code":"BE","type":"nonprofit","lineage":["https://openalex.org/I39327780"]}],"countries":["BE"],"is_corresponding":true,"raw_author_name":"Dries Decap","raw_affiliation_strings":["Department of Information Technology, Ghent University - iMinds, Gaston Crommenlaan 8 bus 201, 9050, Ghent, Belgium","ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Ghent University - iMinds, Gaston Crommenlaan 8 bus 201, 9050, Ghent, Belgium","institution_ids":["https://openalex.org/I39327780","https://openalex.org/I32597200"]},{"raw_affiliation_string":"ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068993139","display_name":"Joke Reumers","orcid":"https://orcid.org/0000-0001-5434-6515"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I137982388","display_name":"Janssen (Belgium)","ror":"https://ror.org/04yzcpd71","country_code":"BE","type":"company","lineage":["https://openalex.org/I1330063522","https://openalex.org/I137982388"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Joke Reumers","raw_affiliation_strings":["ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","Janssen Research & Development, A Division of Janssen Pharmaceutica N.V., 2340, Beerse, Belgium"],"affiliations":[{"raw_affiliation_string":"ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]},{"raw_affiliation_string":"Janssen Research & Development, A Division of Janssen Pharmaceutica N.V., 2340, Beerse, Belgium","institution_ids":["https://openalex.org/I137982388"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003882528","display_name":"Charlotte Herzeel","orcid":"https://orcid.org/0000-0002-9319-9885"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I4210114974","display_name":"IMEC","ror":"https://ror.org/02kcbn207","country_code":"BE","type":"nonprofit","lineage":["https://openalex.org/I4210114974"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Charlotte Herzeel","raw_affiliation_strings":["ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","Imec, Kapeldreef 75, 3001, Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]},{"raw_affiliation_string":"Imec, Kapeldreef 75, 3001, Leuven, Belgium","institution_ids":["https://openalex.org/I4210114974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082125013","display_name":"Pascal Costanza","orcid":"https://orcid.org/0000-0001-8894-3238"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Pascal Costanza","raw_affiliation_strings":["ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","Intel Corporation, Brussels, Belgium"],"affiliations":[{"raw_affiliation_string":"ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]},{"raw_affiliation_string":"Intel Corporation, Brussels, Belgium","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054831130","display_name":"Jan Fostier","orcid":"https://orcid.org/0000-0002-9994-8269"},"institutions":[{"id":"https://openalex.org/I39327780","display_name":"iMinds","ror":"https://ror.org/03baec336","country_code":"BE","type":"nonprofit","lineage":["https://openalex.org/I39327780"]},{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]},{"id":"https://openalex.org/I32597200","display_name":"Ghent University","ror":"https://ror.org/00cv9y106","country_code":"BE","type":"education","lineage":["https://openalex.org/I32597200"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Jan Fostier","raw_affiliation_strings":["Department of Information Technology, Ghent University - iMinds, Gaston Crommenlaan 8 bus 201, 9050, Ghent, Belgium","ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Information Technology, Ghent University - iMinds, Gaston Crommenlaan 8 bus 201, 9050, Ghent, Belgium","institution_ids":["https://openalex.org/I39327780","https://openalex.org/I32597200"]},{"raw_affiliation_string":"ExaScience Life Lab, Kapeldreef 75, 3001, Leuven, Belgium","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5056854080"],"corresponding_institution_ids":["https://openalex.org/I32597200","https://openalex.org/I39327780","https://openalex.org/I99464096"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.9627,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.73606413,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"233","last_page":"242"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11181","display_name":"Advanced Data Storage Technologies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8921827077865601},{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.8332043886184692},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7966489791870117},{"id":"https://openalex.org/keywords/multithreading","display_name":"Multithreading","score":0.795594334602356},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6880548596382141},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.5869730710983276},{"id":"https://openalex.org/keywords/multi-core-processor","display_name":"Multi-core processor","score":0.5235564112663269},{"id":"https://openalex.org/keywords/workload","display_name":"Workload","score":0.4918711185455322},{"id":"https://openalex.org/keywords/simultaneous-multithreading","display_name":"Simultaneous multithreading","score":0.4900771379470825},{"id":"https://openalex.org/keywords/multiprocessing","display_name":"Multiprocessing","score":0.4820916950702667},{"id":"https://openalex.org/keywords/thread","display_name":"Thread (computing)","score":0.378520131111145},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.32116031646728516},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.24613234400749207}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8921827077865601},{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.8332043886184692},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7966489791870117},{"id":"https://openalex.org/C201410400","wikidata":"https://www.wikidata.org/wiki/Q1064412","display_name":"Multithreading","level":3,"score":0.795594334602356},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6880548596382141},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.5869730710983276},{"id":"https://openalex.org/C78766204","wikidata":"https://www.wikidata.org/wiki/Q555032","display_name":"Multi-core processor","level":2,"score":0.5235564112663269},{"id":"https://openalex.org/C2778476105","wikidata":"https://www.wikidata.org/wiki/Q628539","display_name":"Workload","level":2,"score":0.4918711185455322},{"id":"https://openalex.org/C85717602","wikidata":"https://www.wikidata.org/wiki/Q82178","display_name":"Simultaneous multithreading","level":4,"score":0.4900771379470825},{"id":"https://openalex.org/C4822641","wikidata":"https://www.wikidata.org/wiki/Q846651","display_name":"Multiprocessing","level":2,"score":0.4820916950702667},{"id":"https://openalex.org/C138101251","wikidata":"https://www.wikidata.org/wiki/Q213092","display_name":"Thread (computing)","level":2,"score":0.378520131111145},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.32116031646728516},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.24613234400749207},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-32152-3_22","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-32152-3_22","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:archive.ugent.be:8521297","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-8521297","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN: 978-3-319-32151-6","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"pmh:oai:archive.ugent.be:8521297","is_oa":true,"landing_page_url":"http://hdl.handle.net/1854/LU-8521297","pdf_url":null,"source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISBN: 978-3-319-32151-6","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[{"display_name":"Industry, innovation and infrastructure","score":0.4000000059604645,"id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1919257374","https://openalex.org/W2076524521","https://openalex.org/W2091193685","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2119180969","https://openalex.org/W2122732537","https://openalex.org/W2159670728","https://openalex.org/W2168133698","https://openalex.org/W2173213060"],"related_works":["https://openalex.org/W2115561485","https://openalex.org/W1985089255","https://openalex.org/W2153202644","https://openalex.org/W2380961080","https://openalex.org/W2010970156","https://openalex.org/W2374902472","https://openalex.org/W2294358097","https://openalex.org/W4235861380","https://openalex.org/W2106625514","https://openalex.org/W2482815832"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
