{"id":"https://openalex.org/W2401119760","doi":"https://doi.org/10.1007/978-3-319-31957-5_9","title":"LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency","display_name":"LUTE (Local Unpruned Tuple Expansion): Accurate Continuously Flexible Protein Design with General Energy Functions and Rigid-rotamer-like Efficiency","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2401119760","doi":"https://doi.org/10.1007/978-3-319-31957-5_9","mag":"2401119760"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-31957-5_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013267459","display_name":"Mark A. Hallen","orcid":"https://orcid.org/0000-0002-9973-7509"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Hallen","raw_affiliation_strings":["Department of Computer Science, Duke University, Durham, NC, 27708, USA","Department of Computer Science, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham, NC, 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011039716","display_name":"Jonathan Jou","orcid":"https://orcid.org/0000-0001-7172-9032"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jonathan D. Jou","raw_affiliation_strings":["Department of Computer Science, Duke University, Durham, NC, 27708, USA","Department of Computer Science, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham, NC, 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046723017","display_name":"Bruce R. Donald","orcid":"https://orcid.org/0000-0001-6884-4398"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I4210126298","display_name":"Duke Medical Center","ror":"https://ror.org/03njmea73","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876"]},{"id":"https://openalex.org/I4210153043","display_name":"Duke University Hospital","ror":"https://ror.org/04bct7p84","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210126298","https://openalex.org/I4210144876","https://openalex.org/I4210144876","https://openalex.org/I4210153043"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Bruce R. Donald","raw_affiliation_strings":["Department of Biochemistry, Duke University Medical Center, Durham, NC, 27710, USA","Department of Chemistry, Duke University, Durham, NC, 27708, USA","Department of Computer Science, Duke University, Durham, NC, 27708, USA","Department of Biochemistry, Duke University Medical Center, Durham, USA","Department of Chemistry, Duke University, Durham, USA","Department of Computer Science, Duke University, Durham, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry, Duke University Medical Center, Durham, NC, 27710, USA","institution_ids":["https://openalex.org/I4210126298","https://openalex.org/I4210153043"]},{"raw_affiliation_string":"Department of Chemistry, Duke University, Durham, NC, 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham, NC, 27708, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biochemistry, Duke University Medical Center, Durham, USA","institution_ids":["https://openalex.org/I4210126298","https://openalex.org/I4210153043"]},{"raw_affiliation_string":"Department of Chemistry, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Computer Science, Duke University, Durham, USA","institution_ids":["https://openalex.org/I170897317"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5046723017"],"corresponding_institution_ids":["https://openalex.org/I170897317","https://openalex.org/I4210126298","https://openalex.org/I4210153043"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":1.5507,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.7918467,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"122","last_page":"136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10848","display_name":"Advanced Multi-Objective Optimization Algorithms","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10848","display_name":"Advanced Multi-Objective Optimization Algorithms","score":0.982699990272522,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9775999784469604,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.977400004863739,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.7194136381149292},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5752261877059937},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.5560612678527832},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.547911524772644},{"id":"https://openalex.org/keywords/tuple","display_name":"Tuple","score":0.5413908362388611},{"id":"https://openalex.org/keywords/dynamic-programming","display_name":"Dynamic programming","score":0.4435013234615326},{"id":"https://openalex.org/keywords/protein-design","display_name":"Protein design","score":0.4432273805141449},{"id":"https://openalex.org/keywords/mathematical-optimization","display_name":"Mathematical optimization","score":0.43547433614730835},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.4137493968009949},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2893815040588379},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16717469692230225},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.1653517186641693},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.13379153609275818},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.13307276368141174},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.11585715413093567}],"concepts":[{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.7194136381149292},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5752261877059937},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.5560612678527832},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.547911524772644},{"id":"https://openalex.org/C118930307","wikidata":"https://www.wikidata.org/wiki/Q600590","display_name":"Tuple","level":2,"score":0.5413908362388611},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.4435013234615326},{"id":"https://openalex.org/C152769699","wikidata":"https://www.wikidata.org/wiki/Q410814","display_name":"Protein design","level":3,"score":0.4432273805141449},{"id":"https://openalex.org/C126255220","wikidata":"https://www.wikidata.org/wiki/Q141495","display_name":"Mathematical optimization","level":1,"score":0.43547433614730835},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.4137493968009949},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2893815040588379},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16717469692230225},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.1653517186641693},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.13379153609275818},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.13307276368141174},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.11585715413093567},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-31957-5_9","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_9","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","score":0.9100000262260437,"display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W248055415","https://openalex.org/W1532595750","https://openalex.org/W1543820096","https://openalex.org/W1566883694","https://openalex.org/W1579246604","https://openalex.org/W1721447212","https://openalex.org/W1813117265","https://openalex.org/W1964670708","https://openalex.org/W1966185591","https://openalex.org/W1969483458","https://openalex.org/W1971915617","https://openalex.org/W1972728295","https://openalex.org/W1974647057","https://openalex.org/W1980703922","https://openalex.org/W1981699164","https://openalex.org/W1983598802","https://openalex.org/W1986793328","https://openalex.org/W1993174731","https://openalex.org/W2007685030","https://openalex.org/W2012987401","https://openalex.org/W2016240751","https://openalex.org/W2020530495","https://openalex.org/W2034882714","https://openalex.org/W2039388179","https://openalex.org/W2054243594","https://openalex.org/W2073125464","https://openalex.org/W2075369230","https://openalex.org/W2094392347","https://openalex.org/W2096648003","https://openalex.org/W2097649955","https://openalex.org/W2101712920","https://openalex.org/W2106775540","https://openalex.org/W2108422942","https://openalex.org/W2109948087","https://openalex.org/W2110562802","https://openalex.org/W2127116852","https://openalex.org/W2128831799","https://openalex.org/W2134731229","https://openalex.org/W2135815512","https://openalex.org/W2141795045","https://openalex.org/W2160648204","https://openalex.org/W2162292142","https://openalex.org/W2164932718","https://openalex.org/W2172114588","https://openalex.org/W2173184980","https://openalex.org/W2249703070","https://openalex.org/W2321693457","https://openalex.org/W2328911273","https://openalex.org/W2557731087"],"related_works":["https://openalex.org/W1506942559","https://openalex.org/W2051711022","https://openalex.org/W1589376391","https://openalex.org/W2090033344","https://openalex.org/W2403150446","https://openalex.org/W2391299576","https://openalex.org/W2133693067","https://openalex.org/W2037693699","https://openalex.org/W1646393397","https://openalex.org/W3086678357"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-29T14:22:42.915294","created_date":"2025-10-10T00:00:00"}
