{"id":"https://openalex.org/W2360486595","doi":"https://doi.org/10.1007/978-3-319-31957-5_6","title":"Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data","display_name":"Clonality Inference from Single Tumor Samples Using Low Coverage Sequence Data","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2360486595","doi":"https://doi.org/10.1007/978-3-319-31957-5_6","mag":"2360486595"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-31957-5_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053611147","display_name":"Nilgun Donmez","orcid":null},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Nilgun Donmez","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","Vancouver Prostate Centre, Vancouver, BC, Canada","Vancouver Prostate Centre, Vancouver, Canada","School of Computing Science, Simon Fraser University, Burnaby, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, Canada","institution_ids":[]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045683675","display_name":"Salem Maliki\u0107","orcid":"https://orcid.org/0000-0002-4215-5655"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Salem Malikic","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","Vancouver Prostate Centre, Vancouver, BC, Canada","School of Computing Science, Simon Fraser University, Burnaby, Canada","Vancouver Prostate Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055207707","display_name":"Alexander W. Wyatt","orcid":"https://orcid.org/0000-0003-2399-0329"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Alexander W. Wyatt","raw_affiliation_strings":["Department of Urologic Sciences, University of British Columbia, Vancouver, BC, Canada","Vancouver Prostate Centre, Vancouver, BC, Canada","Department of Urologic Sciences, University of British Columbia, Vancouver, Canada","Vancouver Prostate Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urologic Sciences, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Urologic Sciences, University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062125605","display_name":"Martin Gleave","orcid":"https://orcid.org/0000-0003-4235-0167"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Martin E. Gleave","raw_affiliation_strings":["Vancouver Prostate Centre, Vancouver, BC, Canada","Vancouver Prostate Centre, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, Canada","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050325886","display_name":"Colin C. Collins","orcid":"https://orcid.org/0000-0001-6148-6110"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Colin C. Collins","raw_affiliation_strings":["Department of Urologic Sciences, University of British Columbia, Vancouver, BC, Canada","Vancouver Prostate Centre, Vancouver, BC, Canada","Vancouver Prostate Centre, Vancouver, Canada","Department of Urologic Sciences, University of British Columbia, Vancouver, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Urologic Sciences, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, Canada","institution_ids":[]},{"raw_affiliation_string":"Department of Urologic Sciences, University of British Columbia, Vancouver, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102972238","display_name":"S. Cenk \u015eahinalp","orcid":"https://orcid.org/0000-0002-2170-2808"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["CA","US"],"is_corresponding":true,"raw_author_name":"S. Cenk Sahinalp","raw_affiliation_strings":["School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","School of Informatics and Computing, Indiana University, Bloomington, IN, USA","Vancouver Prostate Centre, Vancouver, BC, Canada","School of Computing Science, Simon Fraser University, Burnaby, Canada","Vancouver Prostate Centre, Vancouver, Canada","School of Informatics and Computing, Indiana University, Bloomington, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University, Bloomington, IN, USA","institution_ids":["https://openalex.org/I4210119109"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, BC, Canada","institution_ids":[]},{"raw_affiliation_string":"School of Computing Science, Simon Fraser University, Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Vancouver Prostate Centre, Vancouver, Canada","institution_ids":[]},{"raw_affiliation_string":"School of Informatics and Computing, Indiana University, Bloomington, USA","institution_ids":["https://openalex.org/I4210119109"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102972238"],"corresponding_institution_ids":["https://openalex.org/I18014758","https://openalex.org/I4210119109"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"83","last_page":"94"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9706000089645386,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9617999792098999,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6766985654830933},{"id":"https://openalex.org/keywords/tumor-heterogeneity","display_name":"Tumor heterogeneity","score":0.6430931687355042},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6031287908554077},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.5830953121185303},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.549192488193512},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.5138259530067444},{"id":"https://openalex.org/keywords/solid-tumor","display_name":"Solid tumor","score":0.5036608576774597},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.48523902893066406},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42120444774627686},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.36034417152404785},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3265838623046875},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.31133198738098145},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2580317556858063},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1256941258907318},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.10832536220550537}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6766985654830933},{"id":"https://openalex.org/C3018028425","wikidata":"https://www.wikidata.org/wiki/Q15917291","display_name":"Tumor heterogeneity","level":3,"score":0.6430931687355042},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6031287908554077},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.5830953121185303},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.549192488193512},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.5138259530067444},{"id":"https://openalex.org/C2993640289","wikidata":"https://www.wikidata.org/wiki/Q1216998","display_name":"Solid tumor","level":3,"score":0.5036608576774597},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.48523902893066406},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42120444774627686},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.36034417152404785},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3265838623046875},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.31133198738098145},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2580317556858063},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1256941258907318},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.10832536220550537},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-31957-5_6","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_6","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1490243152","https://openalex.org/W1913227953","https://openalex.org/W1986888627","https://openalex.org/W2002295829","https://openalex.org/W2013974230","https://openalex.org/W2015182193","https://openalex.org/W2019863483","https://openalex.org/W2027246028","https://openalex.org/W2065388551","https://openalex.org/W2067817997","https://openalex.org/W2096746187","https://openalex.org/W2111874706","https://openalex.org/W2114095872","https://openalex.org/W2117656191","https://openalex.org/W2122392334","https://openalex.org/W2139008292","https://openalex.org/W2141177889","https://openalex.org/W2144847592","https://openalex.org/W2150575159","https://openalex.org/W2158485828","https://openalex.org/W2166815431"],"related_works":["https://openalex.org/W1969673184","https://openalex.org/W2060579599","https://openalex.org/W3132115146","https://openalex.org/W2140366683","https://openalex.org/W2619166255","https://openalex.org/W2472738690","https://openalex.org/W1539994441","https://openalex.org/W2074464258","https://openalex.org/W2359210733","https://openalex.org/W3011303654"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-26T07:53:14.480251","created_date":"2025-10-10T00:00:00"}
