{"id":"https://openalex.org/W2400766113","doi":"https://doi.org/10.1007/978-3-319-31957-5_5","title":"pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression","display_name":"pathTiMEx: Joint Inference of Mutually Exclusive Cancer Pathways and Their Dependencies in Tumor Progression","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2400766113","doi":"https://doi.org/10.1007/978-3-319-31957-5_5","mag":"2400766113"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-31957-5_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081194463","display_name":"Simona Cristea","orcid":"https://orcid.org/0009-0003-1276-186X"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Simona Cristea","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","Swiss Institute of Bioinformatics, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038666930","display_name":"Jack Kuipers","orcid":"https://orcid.org/0000-0001-5357-2705"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Jack Kuipers","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","Swiss Institute of Bioinformatics, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035497488","display_name":"Niko Beerenwinkel","orcid":"https://orcid.org/0000-0002-0573-6119"},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]},{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"funder","lineage":["https://openalex.org/I12708293"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Niko Beerenwinkel","raw_affiliation_strings":["Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","Swiss Institute of Bioinformatics, Basel, Switzerland"],"affiliations":[{"raw_affiliation_string":"Department of Biosystems Science and Engineering, ETH Z\u00fcrich, Basel, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5081194463"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I35440088"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.4393,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.88369678,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"65","last_page":"82"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/carcinogenesis","display_name":"Carcinogenesis","score":0.6412279605865479},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6269446611404419},{"id":"https://openalex.org/keywords/tumor-progression","display_name":"Tumor progression","score":0.6025993227958679},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5990089774131775},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5499736666679382},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5100722908973694},{"id":"https://openalex.org/keywords/cdkn2a","display_name":"CDKN2A","score":0.5068467259407043},{"id":"https://openalex.org/keywords/kras","display_name":"KRAS","score":0.4540976583957672},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.30824029445648193},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2595689594745636},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.25420457124710083},{"id":"https://openalex.org/keywords/colorectal-cancer","display_name":"Colorectal cancer","score":0.20329034328460693}],"concepts":[{"id":"https://openalex.org/C555283112","wikidata":"https://www.wikidata.org/wiki/Q1637543","display_name":"Carcinogenesis","level":3,"score":0.6412279605865479},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6269446611404419},{"id":"https://openalex.org/C2779256057","wikidata":"https://www.wikidata.org/wiki/Q16909647","display_name":"Tumor progression","level":3,"score":0.6025993227958679},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5990089774131775},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5499736666679382},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5100722908973694},{"id":"https://openalex.org/C2780265364","wikidata":"https://www.wikidata.org/wiki/Q5009957","display_name":"CDKN2A","level":3,"score":0.5068467259407043},{"id":"https://openalex.org/C2781187634","wikidata":"https://www.wikidata.org/wiki/Q20969980","display_name":"KRAS","level":4,"score":0.4540976583957672},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.30824029445648193},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2595689594745636},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.25420457124710083},{"id":"https://openalex.org/C526805850","wikidata":"https://www.wikidata.org/wiki/Q188874","display_name":"Colorectal cancer","level":3,"score":0.20329034328460693}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-31957-5_5","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_5","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.5299999713897705}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1582541231","https://openalex.org/W1598410563","https://openalex.org/W1911343030","https://openalex.org/W1984853417","https://openalex.org/W1992299847","https://openalex.org/W2001258296","https://openalex.org/W2007533118","https://openalex.org/W2009720434","https://openalex.org/W2015631955","https://openalex.org/W2024060531","https://openalex.org/W2033403400","https://openalex.org/W2036821522","https://openalex.org/W2039577063","https://openalex.org/W2042536531","https://openalex.org/W2042851051","https://openalex.org/W2044433401","https://openalex.org/W2045953361","https://openalex.org/W2049633694","https://openalex.org/W2059300459","https://openalex.org/W2059684559","https://openalex.org/W2061285646","https://openalex.org/W2069086572","https://openalex.org/W2073294762","https://openalex.org/W2077813812","https://openalex.org/W2086320398","https://openalex.org/W2096283457","https://openalex.org/W2098608887","https://openalex.org/W2101354849","https://openalex.org/W2103894337","https://openalex.org/W2109816625","https://openalex.org/W2121443461","https://openalex.org/W2123696077","https://openalex.org/W2141545130","https://openalex.org/W2141811925","https://openalex.org/W2144940507","https://openalex.org/W2149441684","https://openalex.org/W2150625137","https://openalex.org/W2151239501","https://openalex.org/W2153938747","https://openalex.org/W2154444902","https://openalex.org/W2156913035","https://openalex.org/W2157852151","https://openalex.org/W2167278498","https://openalex.org/W2233432342","https://openalex.org/W2253465175","https://openalex.org/W2291420233","https://openalex.org/W2330192890","https://openalex.org/W2563537965","https://openalex.org/W2601000897","https://openalex.org/W2952835752","https://openalex.org/W3104815584","https://openalex.org/W3105265400","https://openalex.org/W4238448376"],"related_works":["https://openalex.org/W3030972949","https://openalex.org/W4283712951","https://openalex.org/W4229832877","https://openalex.org/W4306404900","https://openalex.org/W3111812619","https://openalex.org/W4248366929","https://openalex.org/W2590035663","https://openalex.org/W2914997899","https://openalex.org/W4229670017","https://openalex.org/W2766495528"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
