{"id":"https://openalex.org/W2405194355","doi":"https://doi.org/10.1007/978-3-319-31957-5_3","title":"Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast","display_name":"Accurate Recovery of Ribosome Positions Reveals Slow Translation of Wobble-Pairing Codons in Yeast","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2405194355","doi":"https://doi.org/10.1007/978-3-319-31957-5_3","mag":"2405194355"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-31957-5_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100663370","display_name":"Hao Wang","orcid":"https://orcid.org/0000-0002-8557-7751"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Hao Wang","raw_affiliation_strings":["Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088627617","display_name":"C. Joel McManus","orcid":"https://orcid.org/0000-0002-6605-2642"},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel McManus","raw_affiliation_strings":["Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA","Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]},{"raw_affiliation_string":"Department of Biological Sciences, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113653378","display_name":"Carl Kingsford","orcid":null},"institutions":[{"id":"https://openalex.org/I74973139","display_name":"Carnegie Mellon University","ror":"https://ror.org/05x2bcf33","country_code":"US","type":"education","lineage":["https://openalex.org/I74973139"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Kingsford","raw_affiliation_strings":["Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA"],"affiliations":[{"raw_affiliation_string":"Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, PA, USA","institution_ids":["https://openalex.org/I74973139"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5100663370"],"corresponding_institution_ids":["https://openalex.org/I74973139"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":2.6879,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.89219038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":null,"issue":null,"first_page":"37","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ribosome-profiling","display_name":"Ribosome profiling","score":0.9136062860488892},{"id":"https://openalex.org/keywords/ribosome","display_name":"Ribosome","score":0.67083740234375},{"id":"https://openalex.org/keywords/wobble-base-pair","display_name":"Wobble base pair","score":0.6567872762680054},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.6028265357017517},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49572956562042236},{"id":"https://openalex.org/keywords/speed-wobble","display_name":"Speed wobble","score":0.48458540439605713},{"id":"https://openalex.org/keywords/a-site","display_name":"A-site","score":0.4652814269065857},{"id":"https://openalex.org/keywords/transfer-rna","display_name":"Transfer RNA","score":0.45239534974098206},{"id":"https://openalex.org/keywords/start-codon","display_name":"Start codon","score":0.4181610643863678},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4090329110622406},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.40652647614479065},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.39408665895462036},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3359333276748657},{"id":"https://openalex.org/keywords/messenger-rna","display_name":"Messenger RNA","score":0.264920711517334},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.20631301403045654},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.17362892627716064},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.149556964635849},{"id":"https://openalex.org/keywords/binding-site","display_name":"Binding site","score":0.0832245945930481}],"concepts":[{"id":"https://openalex.org/C182325514","wikidata":"https://www.wikidata.org/wiki/Q7322425","display_name":"Ribosome profiling","level":5,"score":0.9136062860488892},{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.67083740234375},{"id":"https://openalex.org/C203353237","wikidata":"https://www.wikidata.org/wiki/Q2141556","display_name":"Wobble base pair","level":5,"score":0.6567872762680054},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.6028265357017517},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49572956562042236},{"id":"https://openalex.org/C50566430","wikidata":"https://www.wikidata.org/wiki/Q1817859","display_name":"Speed wobble","level":2,"score":0.48458540439605713},{"id":"https://openalex.org/C96267730","wikidata":"https://www.wikidata.org/wiki/Q4647010","display_name":"A-site","level":3,"score":0.4652814269065857},{"id":"https://openalex.org/C153957851","wikidata":"https://www.wikidata.org/wiki/Q201448","display_name":"Transfer RNA","level":4,"score":0.45239534974098206},{"id":"https://openalex.org/C176990463","wikidata":"https://www.wikidata.org/wiki/Q1854186","display_name":"Start codon","level":4,"score":0.4181610643863678},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4090329110622406},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.40652647614479065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.39408665895462036},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3359333276748657},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.264920711517334},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.20631301403045654},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.17362892627716064},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.149556964635849},{"id":"https://openalex.org/C107824862","wikidata":"https://www.wikidata.org/wiki/Q616005","display_name":"Binding site","level":2,"score":0.0832245945930481},{"id":"https://openalex.org/C74650414","wikidata":"https://www.wikidata.org/wiki/Q11397","display_name":"Classical mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-31957-5_3","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31957-5_3","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1879501137","https://openalex.org/W1880719752","https://openalex.org/W1964330084","https://openalex.org/W1981844167","https://openalex.org/W1983886273","https://openalex.org/W1989621875","https://openalex.org/W1994125966","https://openalex.org/W2011503994","https://openalex.org/W2020663470","https://openalex.org/W2024751967","https://openalex.org/W2031341022","https://openalex.org/W2044662818","https://openalex.org/W2050449785","https://openalex.org/W2057850601","https://openalex.org/W2058852389","https://openalex.org/W2061659241","https://openalex.org/W2068694787","https://openalex.org/W2071656832","https://openalex.org/W2071849521","https://openalex.org/W2079517684","https://openalex.org/W2082047304","https://openalex.org/W2107804881","https://openalex.org/W2109602972","https://openalex.org/W2113506612","https://openalex.org/W2116831267","https://openalex.org/W2124753774","https://openalex.org/W2126096918","https://openalex.org/W2133968430","https://openalex.org/W2147837708","https://openalex.org/W2160215304","https://openalex.org/W2161616648","https://openalex.org/W2162170988","https://openalex.org/W2163672244","https://openalex.org/W2167725902","https://openalex.org/W2169456326","https://openalex.org/W2170513170","https://openalex.org/W2193525839","https://openalex.org/W2274824463","https://openalex.org/W2952159244","https://openalex.org/W3098054809"],"related_works":["https://openalex.org/W2137497252","https://openalex.org/W2063867253","https://openalex.org/W1975586269","https://openalex.org/W2013903274","https://openalex.org/W1968157568","https://openalex.org/W2068694787","https://openalex.org/W2167718303","https://openalex.org/W2496843778","https://openalex.org/W1974121825","https://openalex.org/W2001750244"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
