{"id":"https://openalex.org/W2417656853","doi":"https://doi.org/10.1007/978-3-319-31744-1_40","title":"GNATY: Optimized NGS Variant Calling and Coverage Analysis","display_name":"GNATY: Optimized NGS Variant Calling and Coverage Analysis","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W2417656853","doi":"https://doi.org/10.1007/978-3-319-31744-1_40","mag":"2417656853"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-31744-1_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31744-1_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005117578","display_name":"Beat Wolf","orcid":"https://orcid.org/0000-0002-9307-7212"},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]},{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["CH","DE"],"is_corresponding":true,"raw_author_name":"Beat Wolf","raw_affiliation_strings":["Insitute of Complex Systems, University of Applied Sciences Western Switzerland, 1700, Fribourg, Switzerland","University of W\u00fcrzburg, Biozentrum Universit\u00e4t W\u00fcrzburg, 97074, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insitute of Complex Systems, University of Applied Sciences Western Switzerland, 1700, Fribourg, Switzerland","institution_ids":["https://openalex.org/I173439891"]},{"raw_affiliation_string":"University of W\u00fcrzburg, Biozentrum Universit\u00e4t W\u00fcrzburg, 97074, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109155694","display_name":"Pierre Kuonen","orcid":null},"institutions":[{"id":"https://openalex.org/I173439891","display_name":"HES-SO University of Applied Sciences and Arts Western Switzerland","ror":"https://ror.org/01xkakk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I173439891"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Pierre Kuonen","raw_affiliation_strings":["Insitute of Complex Systems, University of Applied Sciences Western Switzerland, 1700, Fribourg, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Insitute of Complex Systems, University of Applied Sciences Western Switzerland, 1700, Fribourg, Switzerland","institution_ids":["https://openalex.org/I173439891"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5086202312","display_name":"Thomas Dandekar","orcid":"https://orcid.org/0000-0003-1886-7625"},"institutions":[{"id":"https://openalex.org/I25974101","display_name":"University of W\u00fcrzburg","ror":"https://ror.org/00fbnyb24","country_code":"DE","type":"education","lineage":["https://openalex.org/I25974101"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Dandekar","raw_affiliation_strings":["University of W\u00fcrzburg, Biozentrum Universit\u00e4t W\u00fcrzburg, 97074, W\u00fcrzburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of W\u00fcrzburg, Biozentrum Universit\u00e4t W\u00fcrzburg, 97074, W\u00fcrzburg, Germany","institution_ids":["https://openalex.org/I25974101"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5005117578"],"corresponding_institution_ids":["https://openalex.org/I173439891","https://openalex.org/I25974101"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05694907,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"446","last_page":"454"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9603999853134155,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9059000015258789,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.8752115368843079},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.862883448600769},{"id":"https://openalex.org/keywords/multithreading","display_name":"Multithreading","score":0.836341142654419},{"id":"https://openalex.org/keywords/flexibility","display_name":"Flexibility (engineering)","score":0.6950128674507141},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5781718492507935},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5135495662689209},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4137806296348572},{"id":"https://openalex.org/keywords/sample","display_name":"Sample (material)","score":0.41139188408851624},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.3638272285461426},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.23667922616004944},{"id":"https://openalex.org/keywords/thread","display_name":"Thread (computing)","score":0.11259901523590088}],"concepts":[{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.8752115368843079},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.862883448600769},{"id":"https://openalex.org/C201410400","wikidata":"https://www.wikidata.org/wiki/Q1064412","display_name":"Multithreading","level":3,"score":0.836341142654419},{"id":"https://openalex.org/C2780598303","wikidata":"https://www.wikidata.org/wiki/Q65921492","display_name":"Flexibility (engineering)","level":2,"score":0.6950128674507141},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5781718492507935},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5135495662689209},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4137806296348572},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.41139188408851624},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.3638272285461426},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.23667922616004944},{"id":"https://openalex.org/C138101251","wikidata":"https://www.wikidata.org/wiki/Q213092","display_name":"Thread (computing)","level":2,"score":0.11259901523590088},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-31744-1_40","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-31744-1_40","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:hesso.tind.io:11057","is_oa":false,"landing_page_url":"https://hesso.swisscovery.slsp.ch/permalink/41SLSP_HES/15q12pm/alma991170271118205501","pdf_url":null,"source":{"id":"https://openalex.org/S4306402432","display_name":"ArODES (HES-SO (https://www.hes-so.ch/))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210088449","host_organization_name":"HES-SO Gen\u00e8ve","host_organization_lineage":["https://openalex.org/I4210088449"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arodes.hes-so.ch/record/11057","raw_type":"Text"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6299999952316284,"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":12,"referenced_works":["https://openalex.org/W1546299505","https://openalex.org/W2033173420","https://openalex.org/W2093931624","https://openalex.org/W2102619694","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2113044281","https://openalex.org/W2117131162","https://openalex.org/W2124465358","https://openalex.org/W2155943701","https://openalex.org/W2168133698","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W3089117407","https://openalex.org/W2317245370","https://openalex.org/W4249323025","https://openalex.org/W198851386","https://openalex.org/W2030310580","https://openalex.org/W947442053","https://openalex.org/W1980160788","https://openalex.org/W2148915962","https://openalex.org/W2283866686","https://openalex.org/W2023373638"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-04T08:18:43.703281","created_date":"2025-10-10T00:00:00"}
