{"id":"https://openalex.org/W2337853226","doi":"https://doi.org/10.1007/978-3-319-27707-3_15","title":"Machine Reading for Extraction of Bacteria and Habitat Taxonomies","display_name":"Machine Reading for Extraction of Bacteria and Habitat Taxonomies","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2337853226","doi":"https://doi.org/10.1007/978-3-319-27707-3_15","mag":"2337853226","pmid":"https://pubmed.ncbi.nlm.nih.gov/27077141"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-27707-3_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-27707-3_15","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://lirias.kuleuven.be/handle/123456789/500585","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087682739","display_name":"Parisa Kordjamshidi","orcid":"https://orcid.org/0000-0002-4606-1824"},"institutions":[{"id":"https://openalex.org/I157725225","display_name":"University of Illinois Urbana-Champaign","ror":"https://ror.org/047426m28","country_code":"US","type":"education","lineage":["https://openalex.org/I157725225"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Parisa Kordjamshidi","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, Urbana, IL, 61801-2302, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, Urbana, IL, 61801-2302, USA","institution_ids":["https://openalex.org/I157725225"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030802348","display_name":"Wouter Massa","orcid":null},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Wouter Massa","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002848888","display_name":"Thomas Provoost","orcid":null},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Thomas Provoost","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075796989","display_name":"Marie\u2010Francine Moens","orcid":"https://orcid.org/0000-0002-3732-9323"},"institutions":[{"id":"https://openalex.org/I99464096","display_name":"KU Leuven","ror":"https://ror.org/05f950310","country_code":"BE","type":"education","lineage":["https://openalex.org/I99464096"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Marie-Francine Moens","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Urbana-Champaign, 201 North Goodwin Avenue, 61801-2302, Urbana, IL, U.S.A., Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","institution_ids":[]},{"raw_affiliation_string":"Department of Computer Science, KU Leuven, Celestijnenlaan 200A, 3001, Heverlee, Belgium","institution_ids":["https://openalex.org/I99464096"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5087682739"],"corresponding_institution_ids":["https://openalex.org/I157725225"],"apc_list":null,"apc_paid":null,"fwci":0.6184,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.71168152,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"574","issue":null,"first_page":"239","last_page":"255"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.9901999831199646,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8020223379135132},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6706086993217468},{"id":"https://openalex.org/keywords/taxonomy","display_name":"Taxonomy (biology)","score":0.5847116708755493},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5467402935028076},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.5454729795455933},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5293712615966797},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.5055346488952637},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.45809680223464966},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4354351758956909},{"id":"https://openalex.org/keywords/reading","display_name":"Reading (process)","score":0.4353620111942291},{"id":"https://openalex.org/keywords/relationship-extraction","display_name":"Relationship extraction","score":0.4318523406982422},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.35642653703689575},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3369009494781494},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3363800346851349},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.1753876507282257},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.11487671732902527},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09688994288444519},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.08917790651321411}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8020223379135132},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6706086993217468},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.5847116708755493},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5467402935028076},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.5454729795455933},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5293712615966797},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.5055346488952637},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.45809680223464966},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4354351758956909},{"id":"https://openalex.org/C554936623","wikidata":"https://www.wikidata.org/wiki/Q199657","display_name":"Reading (process)","level":2,"score":0.4353620111942291},{"id":"https://openalex.org/C153604712","wikidata":"https://www.wikidata.org/wiki/Q7310755","display_name":"Relationship extraction","level":3,"score":0.4318523406982422},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.35642653703689575},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3369009494781494},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3363800346851349},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.1753876507282257},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.11487671732902527},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09688994288444519},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.08917790651321411},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-319-27707-3_15","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-27707-3_15","pdf_url":null,"source":{"id":"https://openalex.org/S2764900261","display_name":"Communications in computer and information science","issn_l":"1865-0929","issn":["1865-0929","1865-0937"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Communications in Computer and Information Science","raw_type":"book-chapter"},{"id":"pmid:27077141","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/27077141","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Biomedical engineering systems and technologies, international joint conference, BIOSTEC ... revised selected papers. BIOSTEC (Conference)","raw_type":null},{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/500585","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/123456789/500585","pdf_url":null,"source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"8th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC), PORTUGAL, Lisbon, 12-15 January 2015","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:europepmc.org:3797581","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4827342","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:lirias2repo.kuleuven.be:123456789/500585","is_oa":true,"landing_page_url":"https://lirias.kuleuven.be/handle/123456789/500585","pdf_url":null,"source":{"id":"https://openalex.org/S4306401954","display_name":"Lirias (KU Leuven)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I99464096","host_organization_name":"KU Leuven","host_organization_lineage":["https://openalex.org/I99464096"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"8th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC), PORTUGAL, Lisbon, 12-15 January 2015","raw_type":"info:eu-repo/semantics/publishedVersion"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.5,"id":"https://metadata.un.org/sdg/4"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W76749362","https://openalex.org/W1623072288","https://openalex.org/W1647671624","https://openalex.org/W1766290689","https://openalex.org/W1974754328","https://openalex.org/W2017262716","https://openalex.org/W2098162425","https://openalex.org/W2098562307","https://openalex.org/W2107530479","https://openalex.org/W2142135462","https://openalex.org/W2167072947","https://openalex.org/W2170694982","https://openalex.org/W2190421341","https://openalex.org/W2250232417","https://openalex.org/W2250930171","https://openalex.org/W2251279337","https://openalex.org/W2252145363","https://openalex.org/W2252163153","https://openalex.org/W2252226131","https://openalex.org/W2524179047","https://openalex.org/W2738143918","https://openalex.org/W2916355958","https://openalex.org/W2951562155","https://openalex.org/W4243059688"],"related_works":["https://openalex.org/W2144822987","https://openalex.org/W2064314529","https://openalex.org/W842810586","https://openalex.org/W4319940250","https://openalex.org/W2352298027","https://openalex.org/W2092919065","https://openalex.org/W3138801416","https://openalex.org/W4236762297","https://openalex.org/W2572241437","https://openalex.org/W4379379356"],"abstract_inverted_index":null,"counts_by_year":[{"year":2018,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
