{"id":"https://openalex.org/W2208145251","doi":"https://doi.org/10.1007/978-3-319-25527-9_23","title":"$$\\ell $$ : An Imperative DSL to Stochastically Simulate Biological Systems","display_name":"$$\\ell $$ : An Imperative DSL to Stochastically Simulate Biological Systems","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2208145251","doi":"https://doi.org/10.1007/978-3-319-25527-9_23","mag":"2208145251"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-25527-9_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-25527-9_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://link.springer.com/content/pdf/bfm:978-3-319-25527-9/1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003560156","display_name":"Roberto Zunino","orcid":"https://orcid.org/0000-0002-9630-429X"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Roberto Zunino","raw_affiliation_strings":["The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","Universit\u00e0 degli Studi di Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024176641","display_name":"\u0110urica Nikoli\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH","IT"],"is_corresponding":false,"raw_author_name":"\u0189urica Nikoli\u0107","raw_affiliation_strings":["Chair of Software Engineering, ETH Zurich, Zurich, Switzerland","The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Software Engineering, ETH Zurich, Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]},{"raw_affiliation_string":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028775661","display_name":"Corrado Priami","orcid":"https://orcid.org/0000-0002-3261-6235"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Corrado Priami","raw_affiliation_strings":["The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","Universit\u00e0 degli Studi di Trento, Povo, Italy","Universit\u00e0 degli Studi di Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Trento, Povo, Italy","institution_ids":["https://openalex.org/I193223587"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036792082","display_name":"Ozan Kahramano\u011fullar\u0131","orcid":"https://orcid.org/0000-0001-5178-7470"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Ozan Kahramano\u011fullar\u0131","raw_affiliation_strings":["The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","Universit\u00e0 degli Studi di Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]},{"raw_affiliation_string":"Universit\u00e0 degli Studi di Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041297002","display_name":"Tommaso Schiavinotto","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]},{"id":"https://openalex.org/I2802934434","display_name":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology","ror":"https://ror.org/04kcgyj43","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I1290206253","https://openalex.org/I193223587","https://openalex.org/I2802934434","https://openalex.org/I4210164937"]},{"id":"https://openalex.org/I4210107393","display_name":"U-Hopper (Italy)","ror":"https://ror.org/01r3ms014","country_code":"IT","type":"company","lineage":["https://openalex.org/I4210107393"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Tommaso Schiavinotto","raw_affiliation_strings":["The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","U-Hopper, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Microsoft Research - University of Trento Centre for Computational and Systems Biology, Rovereto, TN, Italy","institution_ids":["https://openalex.org/I2802934434","https://openalex.org/I193223587"]},{"raw_affiliation_string":"U-Hopper, Trento, Italy","institution_ids":["https://openalex.org/I4210107393"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5003560156"],"corresponding_institution_ids":["https://openalex.org/I193223587","https://openalex.org/I2802934434"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"354","last_page":"374"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9922000169754028,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8585819005966187},{"id":"https://openalex.org/keywords/digital-subscriber-line","display_name":"Digital subscriber line","score":0.7094836235046387},{"id":"https://openalex.org/keywords/compiler","display_name":"Compiler","score":0.6764681339263916},{"id":"https://openalex.org/keywords/domain-specific-language","display_name":"Domain-specific language","score":0.6144394278526306},{"id":"https://openalex.org/keywords/mathematical-proof","display_name":"Mathematical proof","score":0.593610405921936},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.5325711369514465},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.45219358801841736},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4336247444152832},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3435015380382538},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3397388458251953}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8585819005966187},{"id":"https://openalex.org/C201374245","wikidata":"https://www.wikidata.org/wiki/Q104534","display_name":"Digital subscriber line","level":2,"score":0.7094836235046387},{"id":"https://openalex.org/C169590947","wikidata":"https://www.wikidata.org/wiki/Q47506","display_name":"Compiler","level":2,"score":0.6764681339263916},{"id":"https://openalex.org/C135257023","wikidata":"https://www.wikidata.org/wiki/Q691358","display_name":"Domain-specific language","level":2,"score":0.6144394278526306},{"id":"https://openalex.org/C108710211","wikidata":"https://www.wikidata.org/wiki/Q11538","display_name":"Mathematical proof","level":2,"score":0.593610405921936},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.5325711369514465},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.45219358801841736},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4336247444152832},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3435015380382538},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3397388458251953},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-25527-9_23","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-25527-9_23","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:iris.unitn.it:11572/143014","is_oa":true,"landing_page_url":"http://hdl.handle.net/11572/143014","pdf_url":"https://link.springer.com/content/pdf/bfm:978-3-319-25527-9/1","source":{"id":"https://openalex.org/S4377196320","display_name":"Iris (University of Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/bookPart"},{"id":"pmh:oai:arpi.unipi.it:11568/881857","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/881857","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/bookPart"}],"best_oa_location":{"id":"pmh:oai:iris.unitn.it:11572/143014","is_oa":true,"landing_page_url":"http://hdl.handle.net/11572/143014","pdf_url":"https://link.springer.com/content/pdf/bfm:978-3-319-25527-9/1","source":{"id":"https://openalex.org/S4377196320","display_name":"Iris (University of Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/bookPart"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2208145251.pdf","grobid_xml":"https://content.openalex.org/works/W2208145251.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W47675725","https://openalex.org/W198797983","https://openalex.org/W1481465901","https://openalex.org/W1489794659","https://openalex.org/W1513962738","https://openalex.org/W1589828999","https://openalex.org/W1863623968","https://openalex.org/W1978486653","https://openalex.org/W1983350265","https://openalex.org/W1984723872","https://openalex.org/W2004685742","https://openalex.org/W2011257065","https://openalex.org/W2011432832","https://openalex.org/W2027506430","https://openalex.org/W2042321087","https://openalex.org/W2058943257","https://openalex.org/W2064974862","https://openalex.org/W2069107692","https://openalex.org/W2078734278","https://openalex.org/W2084924279","https://openalex.org/W2086812215","https://openalex.org/W2127740987","https://openalex.org/W2132059948","https://openalex.org/W2136626795","https://openalex.org/W2143784594","https://openalex.org/W2144063122","https://openalex.org/W2147420156","https://openalex.org/W2148499015","https://openalex.org/W2148895036","https://openalex.org/W2152482858","https://openalex.org/W2155418451","https://openalex.org/W2158708642","https://openalex.org/W2169193349","https://openalex.org/W2175715045","https://openalex.org/W2284263109","https://openalex.org/W2611943439"],"related_works":["https://openalex.org/W2885657154","https://openalex.org/W4289709346","https://openalex.org/W2119542776","https://openalex.org/W2014596857","https://openalex.org/W2582410692","https://openalex.org/W1485300234","https://openalex.org/W2058907533","https://openalex.org/W2258960507","https://openalex.org/W2140083133","https://openalex.org/W2097052821"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2016-06-24T00:00:00"}
