{"id":"https://openalex.org/W1255693054","doi":"https://doi.org/10.1007/978-3-319-23344-4_34","title":"Interactive and Iterative Annotation for Biomedical Entity Recognition","display_name":"Interactive and Iterative Annotation for Biomedical Entity Recognition","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W1255693054","doi":"https://doi.org/10.1007/978-3-319-23344-4_34","mag":"1255693054"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-23344-4_34","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-23344-4_34","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://openlib.tugraz.at/5d66fcd8cd513","any_repository_has_fulltext":null},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039544387","display_name":"Seid Muhie Yimam","orcid":"https://orcid.org/0000-0002-8289-388X"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Seid Muhie Yimam","raw_affiliation_strings":["CS Department, FG Language Technology, TU Darmstadt, 64289, Darmstadt, Germany"],"affiliations":[{"raw_affiliation_string":"CS Department, FG Language Technology, TU Darmstadt, 64289, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021287757","display_name":"Chris Biemann","orcid":"https://orcid.org/0000-0002-8449-9624"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technical University of Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Chris Biemann","raw_affiliation_strings":["CS Department, FG Language Technology, TU Darmstadt, 64289, Darmstadt, Germany"],"affiliations":[{"raw_affiliation_string":"CS Department, FG Language Technology, TU Darmstadt, 64289, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045132220","display_name":"Ljiljana Trtica Majnari\u0107","orcid":"https://orcid.org/0000-0003-1330-2254"},"institutions":[{"id":"https://openalex.org/I51314090","display_name":"University of Osijek","ror":"https://ror.org/05sw4wc49","country_code":"HR","type":"education","lineage":["https://openalex.org/I51314090"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"Ljiljana Majnaric","raw_affiliation_strings":["Faculty of Medicine, Josip Juraj Strossmayer University of Osijek, Osijek, Croatia"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, Josip Juraj Strossmayer University of Osijek, Osijek, Croatia","institution_ids":["https://openalex.org/I51314090"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050618723","display_name":"\u0160efket \u0160abanovi\u0107","orcid":null},"institutions":[{"id":"https://openalex.org/I51314090","display_name":"University of Osijek","ror":"https://ror.org/05sw4wc49","country_code":"HR","type":"education","lineage":["https://openalex.org/I51314090"]}],"countries":["HR"],"is_corresponding":false,"raw_author_name":"\u0160efket \u0160abanovi\u0107","raw_affiliation_strings":["Faculty of Medicine, Josip Juraj Strossmayer University of Osijek, Osijek, Croatia"],"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, Josip Juraj Strossmayer University of Osijek, Osijek, Croatia","institution_ids":["https://openalex.org/I51314090"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5034657358","display_name":"Andreas Holzinger","orcid":"https://orcid.org/0000-0002-6786-5194"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]},{"id":"https://openalex.org/I4210128031","display_name":"Center For Biomarker Research In Medicine","ror":"https://ror.org/031gwf224","country_code":"AT","type":"nonprofit","lineage":["https://openalex.org/I4210128031"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Andreas Holzinger","raw_affiliation_strings":["CBmed - Center for Biomarker Research in Medicine, Stiftingtalstrasse 5, 8010, Graz, Austria","Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2, 8036, Graz, Austria"],"affiliations":[{"raw_affiliation_string":"CBmed - Center for Biomarker Research in Medicine, Stiftingtalstrasse 5, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4210128031"]},{"raw_affiliation_string":"Research Unit HCI-KDD, Institute for Medical Informatics, Statistics and Documentation, Medical University Graz, Auenbruggerplatz 2, 8036, Graz, Austria","institution_ids":["https://openalex.org/I202276237"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5039544387"],"corresponding_institution_ids":["https://openalex.org/I31512782"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":{"value":5000,"currency":"EUR","value_usd":5392},"fwci":4.3335,"has_fulltext":false,"cited_by_count":15,"citation_normalized_percentile":{"value":0.93729589,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"347","last_page":"357"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.9502873420715332},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8648577928543091},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5225788354873657},{"id":"https://openalex.org/keywords/iterative-learning-control","display_name":"Iterative learning control","score":0.5123839974403381},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.48421573638916016},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4181019067764282}],"concepts":[{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.9502873420715332},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8648577928543091},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5225788354873657},{"id":"https://openalex.org/C117619785","wikidata":"https://www.wikidata.org/wiki/Q6094414","display_name":"Iterative learning control","level":3,"score":0.5123839974403381},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.48421573638916016},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4181019067764282},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-23344-4_34","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-23344-4_34","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:http://openlib.tugraz.at/5d66fcd8cd513","is_oa":true,"landing_page_url":"http://openlib.tugraz.at/5d66fcd8cd513","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.720.535","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.720.535","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://www.lt.informatik.tu-darmstadt.de/fileadmin/user_upload/Group_LangTech/publications/YimamEtAl_BIH2015London.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:http://openlib.tugraz.at/5d66fcd8cd513","is_oa":true,"landing_page_url":"http://openlib.tugraz.at/5d66fcd8cd513","pdf_url":null,"source":null,"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":null},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W15148259","https://openalex.org/W76749362","https://openalex.org/W94547874","https://openalex.org/W102233799","https://openalex.org/W174126432","https://openalex.org/W1482328859","https://openalex.org/W1566432371","https://openalex.org/W1983541059","https://openalex.org/W1987391560","https://openalex.org/W2001357674","https://openalex.org/W2017010150","https://openalex.org/W2021331223","https://openalex.org/W2032566933","https://openalex.org/W2044633729","https://openalex.org/W2048817820","https://openalex.org/W2061948523","https://openalex.org/W2072167633","https://openalex.org/W2094591616","https://openalex.org/W2095766518","https://openalex.org/W2096529583","https://openalex.org/W2096876054","https://openalex.org/W2115639274","https://openalex.org/W2117733879","https://openalex.org/W2125577751","https://openalex.org/W2145270227","https://openalex.org/W2150542838","https://openalex.org/W2159709123","https://openalex.org/W2160987310","https://openalex.org/W2168842392","https://openalex.org/W2168905447","https://openalex.org/W2250857132","https://openalex.org/W2251026067","https://openalex.org/W2251104783","https://openalex.org/W2251403365","https://openalex.org/W2394935510","https://openalex.org/W2490083709","https://openalex.org/W2578406773","https://openalex.org/W2793828080"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4387369504","https://openalex.org/W3046775127","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W3107602296","https://openalex.org/W4364306694","https://openalex.org/W4312192474"],"abstract_inverted_index":{"In":[0,63,95],"this":[1],"paper,":[2],"we":[3,59,67],"demonstrate":[4,44],"the":[5,12,53,64,96],"impact":[6],"of":[7,14,55,81],"interactive":[8,47],"machine":[9,27],"learning":[10,28],"for":[11,40,112],"development":[13,54],"a":[15,21,26,79,103,127],"biomedical":[16],"entity":[17],"recognition":[18],"dataset":[19,57],"using":[20],"human-into-the-loop":[22],"approach:":[23],"during":[24],"annotation,":[25,58],"model":[29],"is":[30],"built":[31],"on":[32],"previous":[33],"annotations":[34],"and":[35,48,75,121,123],"used":[36],"to":[37,85,88,126],"propose":[38],"labels":[39],"subsequent":[41],"annotation.":[42],"To":[43],"that":[45,77,91],"such":[46],"iterative":[49,71],"annotation":[50,72,93],"speeds":[51],"up":[52],"quality":[56],"conduct":[60],"two":[61],"experiments.":[62],"first":[65],"experiment,":[66,98],"carry":[68],"out":[69],"an":[70],"experimental":[73],"simulation":[74],"show":[76],"only":[78],"handful":[80],"medical":[82,108],"abstracts":[83],"need":[84],"be":[86],"annotated":[87],"produce":[89],"suggestions":[90],"increase":[92],"speed.":[94],"second":[97],"clinical":[99],"doctors":[100],"have":[101],"conducted":[102],"case":[104],"study":[105],"in":[106],"annotating":[107],"terms":[109],"documents":[110],"relevant":[111],"their":[113],"research.":[114],"The":[115],"experiments":[116],"validate":[117],"our":[118],"method":[119],"qualitatively":[120],"quantitatively,":[122],"give":[124],"rise":[125],"more":[128],"personalized,":[129],"responsive":[130],"information":[131],"extraction":[132],"technology.":[133]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":4}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
