{"id":"https://openalex.org/W1899647483","doi":"https://doi.org/10.1007/978-3-319-21999-8_13","title":"Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands","display_name":"Stochastic Simulation of the Kinetics of Multiple Interacting Nucleic Acid Strands","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W1899647483","doi":"https://doi.org/10.1007/978-3-319-21999-8_13","mag":"1899647483"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-21999-8_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-21999-8_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.7907/jeby-6x69","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026597533","display_name":"Joseph Schaeffer","orcid":null},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]},{"id":"https://openalex.org/I1286353243","display_name":"Autodesk (United States)","ror":"https://ror.org/00pkt4594","country_code":"US","type":"company","lineage":["https://openalex.org/I1286353243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joseph Malcolm Schaeffer","raw_affiliation_strings":["Autodesk Research, San Francisco, USA","California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Autodesk Research, San Francisco, USA","institution_ids":["https://openalex.org/I1286353243"]},{"raw_affiliation_string":"California Institute of Technology, Pasadena, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012131505","display_name":"Chris Thachuk","orcid":"https://orcid.org/0000-0001-5913-1732"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chris Thachuk","raw_affiliation_strings":["California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, USA","institution_ids":["https://openalex.org/I122411786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000956443","display_name":"Erik Winfree","orcid":"https://orcid.org/0000-0002-5899-7523"},"institutions":[{"id":"https://openalex.org/I122411786","display_name":"California Institute of Technology","ror":"https://ror.org/05dxps055","country_code":"US","type":"education","lineage":["https://openalex.org/I122411786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erik Winfree","raw_affiliation_strings":["California Institute of Technology, Pasadena, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"California Institute of Technology, Pasadena, USA","institution_ids":["https://openalex.org/I122411786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":8.05,"has_fulltext":false,"cited_by_count":45,"citation_normalized_percentile":{"value":0.97472689,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":null,"issue":null,"first_page":"194","last_page":"211"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6312193870544434},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.4773305058479309},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.47393375635147095},{"id":"https://openalex.org/keywords/kinetics","display_name":"Kinetics","score":0.46976184844970703},{"id":"https://openalex.org/keywords/markov-process","display_name":"Markov process","score":0.46430686116218567},{"id":"https://openalex.org/keywords/state-space","display_name":"State space","score":0.4549334943294525},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.449840784072876},{"id":"https://openalex.org/keywords/nucleic-acid","display_name":"Nucleic acid","score":0.4211670160293579},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3815751075744629},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3733792304992676},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18940788507461548},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.17106902599334717},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.16431638598442078}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6312193870544434},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.4773305058479309},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.47393375635147095},{"id":"https://openalex.org/C148898269","wikidata":"https://www.wikidata.org/wiki/Q1108792","display_name":"Kinetics","level":2,"score":0.46976184844970703},{"id":"https://openalex.org/C159886148","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov process","level":2,"score":0.46430686116218567},{"id":"https://openalex.org/C72434380","wikidata":"https://www.wikidata.org/wiki/Q230930","display_name":"State space","level":2,"score":0.4549334943294525},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.449840784072876},{"id":"https://openalex.org/C24107716","wikidata":"https://www.wikidata.org/wiki/Q123619","display_name":"Nucleic acid","level":2,"score":0.4211670160293579},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3815751075744629},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3733792304992676},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18940788507461548},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.17106902599334717},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.16431638598442078},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1007/978-3-319-21999-8_13","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-21999-8_13","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:thesis.library.caltech.edu:7460","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402402","display_name":"CaltechTHESIS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Thesis"},{"id":"pmh:oai:authors.library.caltech.edu:104920","is_oa":false,"landing_page_url":"https://resolver.caltech.edu/CaltechAUTHORS:20200811-152309514","pdf_url":null,"source":{"id":"https://openalex.org/S4306402161","display_name":"CaltechAUTHORS (California Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I122411786","host_organization_name":"California Institute of Technology","host_organization_lineage":["https://openalex.org/I122411786"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Book Section"},{"id":"doi:10.7907/jeby-6x69","is_oa":true,"landing_page_url":"https://doi.org/10.7907/jeby-6x69","pdf_url":null,"source":{"id":"https://openalex.org/S7407050848","display_name":"Caltech Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"thesis"}],"best_oa_location":{"id":"doi:10.7907/jeby-6x69","is_oa":true,"landing_page_url":"https://doi.org/10.7907/jeby-6x69","pdf_url":null,"source":{"id":"https://openalex.org/S7407050848","display_name":"Caltech Library","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"thesis"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W64403321","https://openalex.org/W175404021","https://openalex.org/W1491935735","https://openalex.org/W1506944114","https://openalex.org/W1617520624","https://openalex.org/W1872897726","https://openalex.org/W1964928696","https://openalex.org/W1970663985","https://openalex.org/W1974900622","https://openalex.org/W1980301976","https://openalex.org/W1982789149","https://openalex.org/W1989020100","https://openalex.org/W1989813275","https://openalex.org/W1990476699","https://openalex.org/W1991159148","https://openalex.org/W1991198187","https://openalex.org/W1991889118","https://openalex.org/W1992692415","https://openalex.org/W1995612793","https://openalex.org/W2005615084","https://openalex.org/W2016638271","https://openalex.org/W2020693276","https://openalex.org/W2025374847","https://openalex.org/W2032813700","https://openalex.org/W2050630660","https://openalex.org/W2053783019","https://openalex.org/W2056760934","https://openalex.org/W2062802768","https://openalex.org/W2073878632","https://openalex.org/W2075031385","https://openalex.org/W2077830471","https://openalex.org/W2084798466","https://openalex.org/W2094482261","https://openalex.org/W2096883982","https://openalex.org/W2102699655","https://openalex.org/W2103250001","https://openalex.org/W2112333437","https://openalex.org/W2118934300","https://openalex.org/W2123281294","https://openalex.org/W2135995702","https://openalex.org/W2141157874","https://openalex.org/W2146238633","https://openalex.org/W2148304424","https://openalex.org/W2148339059","https://openalex.org/W2148775102","https://openalex.org/W2150653661","https://openalex.org/W2155418451","https://openalex.org/W2166007193","https://openalex.org/W2166268906","https://openalex.org/W2186876778"],"related_works":["https://openalex.org/W1971444612","https://openalex.org/W1543504406","https://openalex.org/W633173308","https://openalex.org/W2379651310","https://openalex.org/W2113019827","https://openalex.org/W1541249122","https://openalex.org/W2413828414","https://openalex.org/W1487400845","https://openalex.org/W2367222340","https://openalex.org/W1841898224"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
