{"id":"https://openalex.org/W841199482","doi":"https://doi.org/10.1007/978-3-319-18120-2_17","title":"Accelerating Search of Protein Sequence Databases using CUDA-Enabled GPU","display_name":"Accelerating Search of Protein Sequence Databases using CUDA-Enabled GPU","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W841199482","doi":"https://doi.org/10.1007/978-3-319-18120-2_17","mag":"841199482"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-18120-2_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-18120-2_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101699485","display_name":"Lin Cheng","orcid":"https://orcid.org/0000-0002-9163-6818"},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Lin Cheng","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","institution_ids":["https://openalex.org/I60158472"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109069843","display_name":"Greg Butler","orcid":null},"institutions":[{"id":"https://openalex.org/I60158472","display_name":"Concordia University","ror":"https://ror.org/0420zvk78","country_code":"CA","type":"education","lineage":["https://openalex.org/I60158472"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Greg Butler","raw_affiliation_strings":["Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada","institution_ids":["https://openalex.org/I60158472"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101699485"],"corresponding_institution_ids":["https://openalex.org/I60158472"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.092,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.90705469,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"279","last_page":"298"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.8977266550064087},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8796390295028687},{"id":"https://openalex.org/keywords/speedup","display_name":"Speedup","score":0.7581379413604736},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.7249847650527954},{"id":"https://openalex.org/keywords/simd","display_name":"SIMD","score":0.592694878578186},{"id":"https://openalex.org/keywords/instruction-set","display_name":"Instruction set","score":0.47415274381637573},{"id":"https://openalex.org/keywords/central-processing-unit","display_name":"Central processing unit","score":0.41695916652679443},{"id":"https://openalex.org/keywords/smith\u2013waterman-algorithm","display_name":"Smith\u2013Waterman algorithm","score":0.41117435693740845},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.16568389534950256},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.13464903831481934}],"concepts":[{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.8977266550064087},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8796390295028687},{"id":"https://openalex.org/C68339613","wikidata":"https://www.wikidata.org/wiki/Q1549489","display_name":"Speedup","level":2,"score":0.7581379413604736},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.7249847650527954},{"id":"https://openalex.org/C150552126","wikidata":"https://www.wikidata.org/wiki/Q339387","display_name":"SIMD","level":2,"score":0.592694878578186},{"id":"https://openalex.org/C202491316","wikidata":"https://www.wikidata.org/wiki/Q272683","display_name":"Instruction set","level":2,"score":0.47415274381637573},{"id":"https://openalex.org/C49154492","wikidata":"https://www.wikidata.org/wiki/Q5300","display_name":"Central processing unit","level":2,"score":0.41695916652679443},{"id":"https://openalex.org/C72802188","wikidata":"https://www.wikidata.org/wiki/Q1683352","display_name":"Smith\u2013Waterman algorithm","level":5,"score":0.41117435693740845},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.16568389534950256},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.13464903831481934},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-18120-2_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-18120-2_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W77511975","https://openalex.org/W164384110","https://openalex.org/W579519726","https://openalex.org/W1587020780","https://openalex.org/W1598336441","https://openalex.org/W2011652244","https://openalex.org/W2013733655","https://openalex.org/W2018245951","https://openalex.org/W2055043387","https://openalex.org/W2065461987","https://openalex.org/W2073991682","https://openalex.org/W2074231493","https://openalex.org/W2077364005","https://openalex.org/W2087064593","https://openalex.org/W2102122585","https://openalex.org/W2107024533","https://openalex.org/W2118874283","https://openalex.org/W2129717941","https://openalex.org/W2130212247","https://openalex.org/W2132967231","https://openalex.org/W2133540884","https://openalex.org/W2133642410","https://openalex.org/W2136785928","https://openalex.org/W2136944230","https://openalex.org/W2138122982","https://openalex.org/W2146379626","https://openalex.org/W2150427812","https://openalex.org/W2150583975","https://openalex.org/W2164856315","https://openalex.org/W2165752568","https://openalex.org/W2165949232","https://openalex.org/W2618081293","https://openalex.org/W4206928935"],"related_works":["https://openalex.org/W2994245508","https://openalex.org/W2146379626","https://openalex.org/W4242172182","https://openalex.org/W2082875307","https://openalex.org/W4237780868","https://openalex.org/W4285302443","https://openalex.org/W2019451907","https://openalex.org/W2065461987","https://openalex.org/W4385585366","https://openalex.org/W3020152466"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
