{"id":"https://openalex.org/W2150600605","doi":"https://doi.org/10.1007/978-3-319-16480-9_36","title":"Nucleotide Sequence Alignment and Compression via Shortest Unique Substring","display_name":"Nucleotide Sequence Alignment and Compression via Shortest Unique Substring","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W2150600605","doi":"https://doi.org/10.1007/978-3-319-16480-9_36","mag":"2150600605"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-16480-9_36","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-16480-9_36","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028177714","display_name":"Boran Ada\u015f","orcid":null},"institutions":[{"id":"https://openalex.org/I48912391","display_name":"Istanbul Technical University","ror":"https://ror.org/059636586","country_code":"TR","type":"education","lineage":["https://openalex.org/I48912391"]}],"countries":["TR"],"is_corresponding":true,"raw_author_name":"Boran Ada\u015f","raw_affiliation_strings":["Department of Computer Enginering, \u0130stanbul Technical University, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Enginering, \u0130stanbul Technical University, Turkey","institution_ids":["https://openalex.org/I48912391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040308307","display_name":"Ersin Bayraktar","orcid":null},"institutions":[{"id":"https://openalex.org/I48912391","display_name":"Istanbul Technical University","ror":"https://ror.org/059636586","country_code":"TR","type":"education","lineage":["https://openalex.org/I48912391"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ersin Bayraktar","raw_affiliation_strings":["Department of Computer Enginering, \u0130stanbul Technical University, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Computer Enginering, \u0130stanbul Technical University, Turkey","institution_ids":["https://openalex.org/I48912391"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105877451","display_name":"Simone Faro","orcid":"https://orcid.org/0000-0001-5937-5796"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Faro","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004702098","display_name":"Ibraheem Elsayed Moustafa","orcid":null},"institutions":[{"id":"https://openalex.org/I3125470973","display_name":"Istanbul Medipol University","ror":"https://ror.org/037jwzz50","country_code":"TR","type":"education","lineage":["https://openalex.org/I3125470973"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Ibraheem Elsayed Moustafa","raw_affiliation_strings":["Department of Biomedical Enginering, \u0130stanbul Medipol University, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Enginering, \u0130stanbul Medipol University, Turkey","institution_ids":["https://openalex.org/I3125470973"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5024416450","display_name":"M. O\u011fuzhan K\u00fclek\u00e7i","orcid":"https://orcid.org/0000-0002-4583-6261"},"institutions":[{"id":"https://openalex.org/I3125470973","display_name":"Istanbul Medipol University","ror":"https://ror.org/037jwzz50","country_code":"TR","type":"education","lineage":["https://openalex.org/I3125470973"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"M. Oguzhan K\u00fclekci","raw_affiliation_strings":["Department of Biomedical Enginering, \u0130stanbul Medipol University, Turkey"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Enginering, \u0130stanbul Medipol University, Turkey","institution_ids":["https://openalex.org/I3125470973"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5028177714"],"corresponding_institution_ids":["https://openalex.org/I48912391"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":3.092,"has_fulltext":false,"cited_by_count":9,"citation_normalized_percentile":{"value":0.90942532,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":null,"issue":null,"first_page":"363","last_page":"374"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.9414560794830322},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8322968482971191},{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.6940041780471802},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.6216561794281006},{"id":"https://openalex.org/keywords/alignment-free-sequence-analysis","display_name":"Alignment-free sequence analysis","score":0.5972863435745239},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5470318794250488},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5070352554321289},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4653431177139282},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.45924025774002075},{"id":"https://openalex.org/keywords/data-compression","display_name":"Data compression","score":0.42402228713035583},{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.4205935597419739},{"id":"https://openalex.org/keywords/multiple-sequence-alignment","display_name":"Multiple sequence alignment","score":0.4142824709415436},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37299665808677673},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.309481680393219},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.2732613980770111},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24231085181236267},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.12186485528945923},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.0887824296951294},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.08189770579338074},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07495149970054626}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.9414560794830322},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8322968482971191},{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.6940041780471802},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.6216561794281006},{"id":"https://openalex.org/C180384323","wikidata":"https://www.wikidata.org/wiki/Q16335137","display_name":"Alignment-free sequence analysis","level":5,"score":0.5972863435745239},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5470318794250488},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5070352554321289},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4653431177139282},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.45924025774002075},{"id":"https://openalex.org/C78548338","wikidata":"https://www.wikidata.org/wiki/Q2493","display_name":"Data compression","level":2,"score":0.42402228713035583},{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.4205935597419739},{"id":"https://openalex.org/C88031987","wikidata":"https://www.wikidata.org/wiki/Q1377767","display_name":"Multiple sequence alignment","level":5,"score":0.4142824709415436},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37299665808677673},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.309481680393219},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.2732613980770111},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24231085181236267},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.12186485528945923},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0887824296951294},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.08189770579338074},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07495149970054626},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-16480-9_36","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-16480-9_36","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:polen.itu.edu.tr:11527/56037","is_oa":false,"landing_page_url":"https://hdl.handle.net/11527/56037","pdf_url":null,"source":{"id":"https://openalex.org/S4306400460","display_name":"Istanbul Technical University Academic Open Archive (Istanbul Technical University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I48912391","host_organization_name":"Istanbul Technical University","host_organization_lineage":["https://openalex.org/I48912391"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference object"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W212038867","https://openalex.org/W1751724878","https://openalex.org/W2000586119","https://openalex.org/W2002204859","https://openalex.org/W2034337154","https://openalex.org/W2074490119","https://openalex.org/W2087064593","https://openalex.org/W2092880969","https://openalex.org/W2103441770","https://openalex.org/W2111044311","https://openalex.org/W2131106408","https://openalex.org/W2138196010","https://openalex.org/W2139747296","https://openalex.org/W2140673900","https://openalex.org/W2159084616","https://openalex.org/W2165293958","https://openalex.org/W2167943254","https://openalex.org/W2170551349","https://openalex.org/W2755732910","https://openalex.org/W4233928114","https://openalex.org/W4247053599"],"related_works":["https://openalex.org/W2051969447","https://openalex.org/W2730968108","https://openalex.org/W2133116680","https://openalex.org/W4386770652","https://openalex.org/W1482324242","https://openalex.org/W1886146948","https://openalex.org/W2141411672","https://openalex.org/W187239587","https://openalex.org/W2158700816","https://openalex.org/W2091678889"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2015,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
