{"id":"https://openalex.org/W1933764646","doi":"https://doi.org/10.1007/978-3-319-15579-1_8","title":"Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree","display_name":"Construction of a de Bruijn Graph for Assembly from a Truncated Suffix Tree","publication_year":2015,"publication_date":"2015-01-01","ids":{"openalex":"https://openalex.org/W1933764646","doi":"https://doi.org/10.1007/978-3-319-15579-1_8","mag":"1933764646"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-15579-1_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-15579-1_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.science/hal-01955978","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063113085","display_name":"Bastien Cazaux","orcid":"https://orcid.org/0000-0002-1761-4354"},"institutions":[{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Bastien Cazaux","raw_affiliation_strings":["L.I.R.M.M. and Institut Biologie Computationnelle, Universit\u00e9 de Montpellier II, CNRS U.M.R. 5506, Montpellier, France"],"affiliations":[{"raw_affiliation_string":"L.I.R.M.M. and Institut Biologie Computationnelle, Universit\u00e9 de Montpellier II, CNRS U.M.R. 5506, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052475314","display_name":"Thierry Lecroq","orcid":"https://orcid.org/0000-0002-1900-3397"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210108118","display_name":"Laboratoire d'Informatique, du Traitement de l'Information et des Syst\u00e8mes","ror":"https://ror.org/01f1vfy95","country_code":"FR","type":"facility","lineage":["https://openalex.org/I141576021","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210105918","https://openalex.org/I4210108118","https://openalex.org/I62396329","https://openalex.org/I88814501"]},{"id":"https://openalex.org/I62396329","display_name":"Universit\u00e9 de Rouen Normandie","ror":"https://ror.org/03nhjew95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210105918","https://openalex.org/I62396329"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Thierry Lecroq","raw_affiliation_strings":["LITIS EA 4108, NormaStic CNRS FR 3638, Universit\u00e9 de Rouen, Rouen, France"],"affiliations":[{"raw_affiliation_string":"LITIS EA 4108, NormaStic CNRS FR 3638, Universit\u00e9 de Rouen, Rouen, France","institution_ids":["https://openalex.org/I62396329","https://openalex.org/I4210108118","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010392318","display_name":"\u00c9ric Rivals","orcid":"https://orcid.org/0000-0003-3791-3973"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Eric Rivals","raw_affiliation_strings":["L.I.R.M.M. and Institut Biologie Computationnelle, Universit\u00e9 de Montpellier II, CNRS U.M.R. 5506, Montpellier, France"],"affiliations":[{"raw_affiliation_string":"L.I.R.M.M. and Institut Biologie Computationnelle, Universit\u00e9 de Montpellier II, CNRS U.M.R. 5506, Montpellier, France","institution_ids":["https://openalex.org/I19894307","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5063113085"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":0.3409,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.55363841,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":null,"issue":null,"first_page":"109","last_page":"120"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9839000105857849,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/substring","display_name":"Substring","score":0.8749649524688721},{"id":"https://openalex.org/keywords/suffix-tree","display_name":"Suffix tree","score":0.826241135597229},{"id":"https://openalex.org/keywords/generalized-suffix-tree","display_name":"Generalized suffix tree","score":0.7592958211898804},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7194734811782837},{"id":"https://openalex.org/keywords/compressed-suffix-array","display_name":"Compressed suffix array","score":0.6924237012863159},{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.6497184038162231},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5093644857406616},{"id":"https://openalex.org/keywords/suffix-array","display_name":"Suffix array","score":0.5048761963844299},{"id":"https://openalex.org/keywords/de-bruijn-sequence","display_name":"De Bruijn sequence","score":0.5034143328666687},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5023126602172852},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.45858001708984375},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.45038464665412903},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.43061283230781555},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.37875616550445557},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.20309576392173767},{"id":"https://openalex.org/keywords/discrete-mathematics","display_name":"Discrete mathematics","score":0.18774402141571045},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.17810750007629395},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.07146060466766357}],"concepts":[{"id":"https://openalex.org/C182407805","wikidata":"https://www.wikidata.org/wiki/Q2626534","display_name":"Substring","level":3,"score":0.8749649524688721},{"id":"https://openalex.org/C2781166958","wikidata":"https://www.wikidata.org/wiki/Q1426863","display_name":"Suffix tree","level":3,"score":0.826241135597229},{"id":"https://openalex.org/C118146561","wikidata":"https://www.wikidata.org/wiki/Q5532514","display_name":"Generalized suffix tree","level":4,"score":0.7592958211898804},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7194734811782837},{"id":"https://openalex.org/C100903775","wikidata":"https://www.wikidata.org/wiki/Q5157028","display_name":"Compressed suffix array","level":4,"score":0.6924237012863159},{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.6497184038162231},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5093644857406616},{"id":"https://openalex.org/C2779259728","wikidata":"https://www.wikidata.org/wiki/Q281472","display_name":"Suffix array","level":3,"score":0.5048761963844299},{"id":"https://openalex.org/C170320093","wikidata":"https://www.wikidata.org/wiki/Q1953457","display_name":"De Bruijn sequence","level":2,"score":0.5034143328666687},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5023126602172852},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.45858001708984375},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.45038464665412903},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.43061283230781555},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.37875616550445557},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.20309576392173767},{"id":"https://openalex.org/C118615104","wikidata":"https://www.wikidata.org/wiki/Q121416","display_name":"Discrete mathematics","level":1,"score":0.18774402141571045},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.17810750007629395},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.07146060466766357}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-15579-1_8","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-15579-1_8","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.707.2281","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.707.2281","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-igm.univ-mlv.fr/%7Elecroq/articles/lata2015-1.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-01955978v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01955978","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://grammars.grlmc.com/LATA2015/","raw_type":"Conference papers"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-01955978v1","is_oa":true,"landing_page_url":"https://hal.science/hal-01955978","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://grammars.grlmc.com/LATA2015/","raw_type":"Conference papers"},"sustainable_development_goals":[{"score":0.46000000834465027,"id":"https://metadata.un.org/sdg/12","display_name":"Responsible consumption and production"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W6247929","https://openalex.org/W77861361","https://openalex.org/W194848955","https://openalex.org/W938539187","https://openalex.org/W1485516007","https://openalex.org/W1513153538","https://openalex.org/W1598134722","https://openalex.org/W1975136411","https://openalex.org/W1990061958","https://openalex.org/W2027447543","https://openalex.org/W2105656684","https://openalex.org/W2121252285","https://openalex.org/W2133531097","https://openalex.org/W2136651963","https://openalex.org/W2142702487","https://openalex.org/W2161361792","https://openalex.org/W2165963439","https://openalex.org/W2477408078","https://openalex.org/W2578819792","https://openalex.org/W2746710705","https://openalex.org/W4312586064"],"related_works":["https://openalex.org/W2063841356","https://openalex.org/W2405149725","https://openalex.org/W2003608043","https://openalex.org/W2118703123","https://openalex.org/W1527782099","https://openalex.org/W2067974452","https://openalex.org/W4385595111","https://openalex.org/W1543263356","https://openalex.org/W1749587086","https://openalex.org/W1933764646"],"abstract_inverted_index":null,"counts_by_year":[{"year":2016,"cited_by_count":1}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
