{"id":"https://openalex.org/W2260729165","doi":"https://doi.org/10.1007/978-3-319-12418-6_7","title":"Evolution of Genes Neighborhood within Reconciled Phylogenies: An Ensemble Approach","display_name":"Evolution of Genes Neighborhood within Reconciled Phylogenies: An Ensemble Approach","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2260729165","doi":"https://doi.org/10.1007/978-3-319-12418-6_7","mag":"2260729165","pmid":"https://pubmed.ncbi.nlm.nih.gov/26696141"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-12418-6_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-12418-6_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063811688","display_name":"C\u00e9dric Chauve","orcid":"https://orcid.org/0000-0001-9837-1878"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Cedric Chauve","raw_affiliation_strings":["Department of Mathematics, Simon Fraser University, Burnaby, Canada","Department of Mathematics, Simon Fraser University, 8888 University Drive, V5A S6 Burnaby, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, 8888 University Drive, V5A S6 Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076325273","display_name":"Yann Ponty","orcid":"https://orcid.org/0000-0002-7615-3930"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I2802850869","display_name":"Pacific Institute for the Mathematical Sciences","ror":"https://ror.org/04w49dw51","country_code":"CA","type":"facility","lineage":["https://openalex.org/I2802850869"]},{"id":"https://openalex.org/I4210139461","display_name":"Laboratoire d'Informatique de l'\u00c9cole Polytechnique","ror":"https://ror.org/04afed728","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210139461","https://openalex.org/I4210145102","https://openalex.org/I4210159245"]}],"countries":["CA","FR"],"is_corresponding":false,"raw_author_name":"Yann Ponty","raw_affiliation_strings":["Department of Mathematics, Simon Fraser University, Burnaby, Canada","Pacific Institute for Mathematical Sciences, CNRS UMI3069, Vancouver, Canada","Pacific Institute for the Mathematical Sciences \u2013 CNRS UMI 3069, Simon Fraser University, 8888 University Drive, V5A 1S6 Burnaby, Canada","Laboratoire d\u2019Informatique de l\u2019Ecole Polytechnique \u2013 CNRS UMR 7161, \u00c9cole Polytechnique, Palaiseau, France","Department of Mathematics, Simon Fraser University, 8888 University Drive, V5A S6 Burnaby, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Pacific Institute for Mathematical Sciences, CNRS UMI3069, Vancouver, Canada","institution_ids":["https://openalex.org/I2802850869"]},{"raw_affiliation_string":"Pacific Institute for the Mathematical Sciences \u2013 CNRS UMI 3069, Simon Fraser University, 8888 University Drive, V5A 1S6 Burnaby, Canada","institution_ids":["https://openalex.org/I2802850869","https://openalex.org/I18014758"]},{"raw_affiliation_string":"Laboratoire d\u2019Informatique de l\u2019Ecole Polytechnique \u2013 CNRS UMR 7161, \u00c9cole Polytechnique, Palaiseau, France","institution_ids":["https://openalex.org/I4210139461","https://openalex.org/I142476485","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, 8888 University Drive, V5A S6 Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045415174","display_name":"Jo\u00e3o Paulo Pereira Zanetti","orcid":"https://orcid.org/0000-0002-9955-7751"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]},{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]},{"id":"https://openalex.org/I4210116822","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78","country_code":"BR","type":"other","lineage":["https://openalex.org/I4210116822"]}],"countries":["BR","CA"],"is_corresponding":false,"raw_author_name":"Jo\u00e3o Paulo Pereira Zanetti","raw_affiliation_strings":["Department of Mathematics, Simon Fraser University, Burnaby, Canada","Institute of Computing, UNICAMP, Campinas, Brazil","S\u00e3o Paulo Research Foundation, FAPESP, S\u00e3o Paulo, Brazil","Institute of Computing, University of Campinas, Campinas, Brazil","Department of Mathematics, Simon Fraser University, 8888 University Drive, V5A S6 Burnaby, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]},{"raw_affiliation_string":"Institute of Computing, UNICAMP, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"S\u00e3o Paulo Research Foundation, FAPESP, S\u00e3o Paulo, Brazil","institution_ids":["https://openalex.org/I4210116822"]},{"raw_affiliation_string":"Institute of Computing, University of Campinas, Campinas, Brazil","institution_ids":["https://openalex.org/I181391015"]},{"raw_affiliation_string":"Department of Mathematics, Simon Fraser University, 8888 University Drive, V5A S6 Burnaby, Canada","institution_ids":["https://openalex.org/I18014758"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5063811688"],"corresponding_institution_ids":["https://openalex.org/I18014758"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":11.7545,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.98906844,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"16 Suppl 19","issue":null,"first_page":"49","last_page":"56"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10100","display_name":"Metaheuristic Optimization Algorithms Research","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.582538366317749},{"id":"https://openalex.org/keywords/scheme","display_name":"Scheme (mathematics)","score":0.5360048413276672},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.49953770637512207},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.47639814019203186},{"id":"https://openalex.org/keywords/synteny","display_name":"Synteny","score":0.44493427872657776},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.274783730506897},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.27258336544036865},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1956629753112793},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19098809361457825},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.12511366605758667},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10396930575370789}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.582538366317749},{"id":"https://openalex.org/C77618280","wikidata":"https://www.wikidata.org/wiki/Q1155772","display_name":"Scheme (mathematics)","level":2,"score":0.5360048413276672},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.49953770637512207},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.47639814019203186},{"id":"https://openalex.org/C53702515","wikidata":"https://www.wikidata.org/wiki/Q971246","display_name":"Synteny","level":4,"score":0.44493427872657776},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.274783730506897},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.27258336544036865},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1956629753112793},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19098809361457825},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.12511366605758667},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10396930575370789},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D008322","descriptor_name":"Mammals","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013696","descriptor_name":"Temperature","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1007/978-3-319-12418-6_7","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-12418-6_7","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmid:26696141","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26696141","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":30,"referenced_works":["https://openalex.org/W155408510","https://openalex.org/W598887167","https://openalex.org/W638482479","https://openalex.org/W1515566756","https://openalex.org/W1543796220","https://openalex.org/W1918663757","https://openalex.org/W1984675364","https://openalex.org/W1990561950","https://openalex.org/W1991419740","https://openalex.org/W2045489348","https://openalex.org/W2047706513","https://openalex.org/W2090619251","https://openalex.org/W2091918228","https://openalex.org/W2095023795","https://openalex.org/W2110014387","https://openalex.org/W2112755610","https://openalex.org/W2114109162","https://openalex.org/W2132318428","https://openalex.org/W2135894797","https://openalex.org/W2144642668","https://openalex.org/W2144653577","https://openalex.org/W2146408445","https://openalex.org/W2147428165","https://openalex.org/W2157616815","https://openalex.org/W2167539386","https://openalex.org/W2170748243","https://openalex.org/W2170767438","https://openalex.org/W2490359642","https://openalex.org/W4238384456","https://openalex.org/W4239719595"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W1969010119","https://openalex.org/W4395463268","https://openalex.org/W2626545547","https://openalex.org/W2167155214","https://openalex.org/W2124599625","https://openalex.org/W2952105401","https://openalex.org/W2347154653"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":5}],"updated_date":"2026-04-30T09:15:22.047038","created_date":"2025-10-10T00:00:00"}
