{"id":"https://openalex.org/W2007533118","doi":"https://doi.org/10.1007/978-3-319-05269-4_20","title":"Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data","display_name":"Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2007533118","doi":"https://doi.org/10.1007/978-3-319-05269-4_20","mag":"2007533118"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-05269-4_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-05269-4_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"conference-paper","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025899028","display_name":"Benjamin J. Raphael","orcid":"https://orcid.org/0000-0003-1274-048X"},"institutions":[{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin J. Raphael","raw_affiliation_strings":["Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, USA","institution_ids":["https://openalex.org/I27804330"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060279781","display_name":"Fabio Vandin","orcid":"https://orcid.org/0000-0003-2244-2320"},"institutions":[{"id":"https://openalex.org/I177969490","display_name":"University of Southern Denmark","ror":"https://ror.org/03yrrjy16","country_code":"DK","type":"education","lineage":["https://openalex.org/I177969490"]},{"id":"https://openalex.org/I27804330","display_name":"Brown University","ror":"https://ror.org/05gq02987","country_code":"US","type":"education","lineage":["https://openalex.org/I27804330"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Fabio Vandin","raw_affiliation_strings":["Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, USA","Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Center for Computational Molecular Biology, Brown University, Providence, USA","institution_ids":["https://openalex.org/I27804330"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Southern Denmark, Odense, Denmark","institution_ids":["https://openalex.org/I177969490"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"250","last_page":"264"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11369","display_name":"Genetic factors in colorectal cancer","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9940999746322632,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6436250805854797},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6256623268127441},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4554469585418701},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2835872173309326},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.15837639570236206},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10808491706848145}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6436250805854797},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6256623268127441},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4554469585418701},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2835872173309326},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.15837639570236206},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10808491706848145}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1007/978-3-319-05269-4_20","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-05269-4_20","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},{"id":"pmh:oai:sdu.dk:openaire_cris_publications/2fd9642a-7a31-4512-a158-5488b5d23a17","is_oa":false,"landing_page_url":"https://portal.findresearcher.sdu.dk/da/publications/2fd9642a-7a31-4512-a158-5488b5d23a17","pdf_url":null,"source":{"id":"https://openalex.org/S4306400423","display_name":"University of Southern Denmark Research Portal (University of Southern Denmark)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177969490","host_organization_name":"University of Southern Denmark","host_organization_lineage":["https://openalex.org/I177969490"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Raphael, B J & Vandin, F 2014, Simultaneous Inference of Cancer Pathways and Tumor Progression from Cross-Sectional Mutation Data. in R Sharan (ed.), Proceeding of 18th Annual International Conference on Research in Computational Molecular Biology. Springer, Lecture Notes in Computer Science, vol. 8394, pp. 250-264, International Conference on Research in Computational Molecular Biology, Pittsburgh, United States, 02/04/2014. https://doi.org/10.1007/978-3-319-05269-4_20","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:www.research.unipd.it:11577/3231562","is_oa":false,"landing_page_url":"http://hdl.handle.net/11577/3231562","pdf_url":null,"source":{"id":"https://openalex.org/S4306402547","display_name":"Padua Research Archive (University of Padova)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138689650","host_organization_name":"University of Padua","host_organization_lineage":["https://openalex.org/I138689650"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6600000262260437,"display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1981276685","https://openalex.org/W1984853417","https://openalex.org/W2001258296","https://openalex.org/W2009720434","https://openalex.org/W2013115302","https://openalex.org/W2015631955","https://openalex.org/W2017283085","https://openalex.org/W2022495797","https://openalex.org/W2025183726","https://openalex.org/W2036821522","https://openalex.org/W2039577063","https://openalex.org/W2042536531","https://openalex.org/W2042851051","https://openalex.org/W2044433401","https://openalex.org/W2053256077","https://openalex.org/W2059684559","https://openalex.org/W2061285646","https://openalex.org/W2073294762","https://openalex.org/W2098608887","https://openalex.org/W2101354849","https://openalex.org/W2109816625","https://openalex.org/W2118527670","https://openalex.org/W2121443461","https://openalex.org/W2123576600","https://openalex.org/W2126172213","https://openalex.org/W2144208087","https://openalex.org/W2144940507","https://openalex.org/W2149082178","https://openalex.org/W2150625137","https://openalex.org/W2153069574","https://openalex.org/W2167278498","https://openalex.org/W2179763962","https://openalex.org/W2262414037","https://openalex.org/W2604272474","https://openalex.org/W2610167300","https://openalex.org/W4238448376","https://openalex.org/W4248735138"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":null,"counts_by_year":[{"year":2019,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2025-10-10T00:00:00"}
