{"id":"https://openalex.org/W2245756385","doi":"https://doi.org/10.1007/978-3-319-05269-4_17","title":"Building a Pangenome Reference for a Population","display_name":"Building a Pangenome Reference for a Population","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2245756385","doi":"https://doi.org/10.1007/978-3-319-05269-4_17","mag":"2245756385"},"language":"en","primary_location":{"id":"doi:10.1007/978-3-319-05269-4_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-05269-4_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"},"type":"book-chapter","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5108549697","display_name":"Ngan Nguyen","orcid":"https://orcid.org/0009-0004-3494-0305"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ngan Nguyen","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077539873","display_name":"Glenn Hickey","orcid":"https://orcid.org/0000-0002-2280-9404"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Glenn Hickey","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001128672","display_name":"Daniel R. Zerbino","orcid":"https://orcid.org/0000-0001-5350-3056"},"institutions":[{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"funder","lineage":["https://openalex.org/I87048295"]},{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Daniel R. Zerbino","raw_affiliation_strings":["Wellcome Trust Genome Campus, EMBL-EBI, Cambridge, CB10 1SD, UK"],"affiliations":[{"raw_affiliation_string":"Wellcome Trust Genome Campus, EMBL-EBI, Cambridge, CB10 1SD, UK","institution_ids":["https://openalex.org/I87048295","https://openalex.org/I1303153112"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063722321","display_name":"Brian J. Raney","orcid":"https://orcid.org/0000-0002-9708-1390"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brian Raney","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053546027","display_name":"Dent Earl","orcid":null},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dent Earl","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001974568","display_name":"Joel Armstrong","orcid":"https://orcid.org/0000-0003-2077-4671"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joel Armstrong","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090849321","display_name":"David Haussler","orcid":"https://orcid.org/0000-0003-1533-4575"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]},{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Haussler","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","Howard Hughes Medical Institute, University of California, Santa Cruz, CA, 95064, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]},{"raw_affiliation_string":"Howard Hughes Medical Institute, University of California, Santa Cruz, CA, 95064, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I185103710"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5061203088","display_name":"Benedict Paten","orcid":"https://orcid.org/0000-0001-8863-3539"},"institutions":[{"id":"https://openalex.org/I185103710","display_name":"University of California, Santa Cruz","ror":"https://ror.org/03s65by71","country_code":"US","type":"education","lineage":["https://openalex.org/I185103710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benedict Paten","raw_affiliation_strings":["Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA"],"affiliations":[{"raw_affiliation_string":"Center for Biomolecular Science and Engineering, University of California Santa Cruz, CA, USA","institution_ids":["https://openalex.org/I185103710"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5108549697"],"corresponding_institution_ids":["https://openalex.org/I185103710"],"apc_list":{"value":5000,"currency":"EUR","value_usd":5392},"apc_paid":null,"fwci":5.4423,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.96519666,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":null,"issue":null,"first_page":"207","last_page":"221"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9883999824523926,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7351084351539612},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7224520444869995},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.6421020030975342},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5219916105270386},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.47709351778030396},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.45211610198020935},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.40288734436035156},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15414807200431824},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1469745635986328},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09031066298484802}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7351084351539612},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7224520444869995},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.6421020030975342},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5219916105270386},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.47709351778030396},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.45211610198020935},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.40288734436035156},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15414807200431824},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1469745635986328},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09031066298484802},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1007/978-3-319-05269-4_17","is_oa":false,"landing_page_url":"https://doi.org/10.1007/978-3-319-05269-4_17","pdf_url":null,"source":{"id":"https://openalex.org/S106296714","display_name":"Lecture notes in computer science","issn_l":"0302-9743","issn":["0302-9743","1611-3349"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"book series"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Lecture Notes in Computer Science","raw_type":"book-chapter"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1544691147","https://openalex.org/W1652529314","https://openalex.org/W1985514943","https://openalex.org/W2027752285","https://openalex.org/W2029036185","https://openalex.org/W2030191595","https://openalex.org/W2035596374","https://openalex.org/W2037219729","https://openalex.org/W2044506914","https://openalex.org/W2072483773","https://openalex.org/W2093932542","https://openalex.org/W2114416522","https://openalex.org/W2138113165","https://openalex.org/W2166825456","https://openalex.org/W2167827709","https://openalex.org/W2171777347","https://openalex.org/W2401610261","https://openalex.org/W2885727518","https://openalex.org/W2916083703","https://openalex.org/W3143219376","https://openalex.org/W3149604617","https://openalex.org/W4239181501","https://openalex.org/W4240249796","https://openalex.org/W4256046779"],"related_works":["https://openalex.org/W1850890413","https://openalex.org/W2247945216","https://openalex.org/W2015256439","https://openalex.org/W2148088562","https://openalex.org/W1524797997","https://openalex.org/W3021348214","https://openalex.org/W1515357946","https://openalex.org/W2046530767","https://openalex.org/W2165686834","https://openalex.org/W2096147428","https://openalex.org/W2614415896","https://openalex.org/W828903687","https://openalex.org/W1544273448","https://openalex.org/W2048620141","https://openalex.org/W2953158004","https://openalex.org/W2143235667","https://openalex.org/W2952677105","https://openalex.org/W2158005331","https://openalex.org/W2123464221","https://openalex.org/W2062485954"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
